Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h12f
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 575 PCYCTFERAKKT 610
           PCYCT E+ K T
Sbjct: 1   PCYCTCEKCKIT 12


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 369 ISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKE 467
           I     ++LV    DF++DL+A  G + Q  +E
Sbjct: 467 IQNVDVSQLVTLFTDFYVDLDAVTGHQSQQQQE 499


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -1

Query: 517 KDCRRKVRRSSLAHSMHSLHNCTSIPIPASKSRKKSTRERTSFAALALLMRLKNGL 350
           ++  R +++  L + +  +     +    SKSR   +R+R+S +  +  + L N L
Sbjct: 51  REHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRSSTSNTSKTVILSNKL 106


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = -1

Query: 517 KDCRRKVRRSSLAHSMHSLHNCTSIPIPASKSRKKSTRERTSFAALALLMRLKNGL 350
           ++  R +++  L + +  +     +    SKSR   +R+R++ +  +  + L N L
Sbjct: 51  REHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKL 106


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = -1

Query: 517 KDCRRKVRRSSLAHSMHSLHNCTSIPIPASKSRKKSTRERTSFAALALLMRLKNGL 350
           ++ +R +++  L + +  +     +    SKSR   +R+R++ +  +  + L N L
Sbjct: 51  REHQRLMKKMILEYEIRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKL 106


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 520 SKDCRRKVRRSSLAHSMHSLHNCTSIPIPAS 428
           SKD    ++++     +HSL +    PIPAS
Sbjct: 132 SKDFIDFIQKNLQCCGVHSLSDYNDKPIPAS 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,043
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)