Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13h09f
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 29 0.75
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 1.3
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 1.7
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.0
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 4.0
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 4.0
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 5.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 7.0
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.0
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 9.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 9.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.2
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.7 bits (61), Expect = 0.75
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 522 TLDSSWLSGIQLCRWNFNSFLQRFRKHSRTDSLRSSLRKLLIHII 388
T DS G+ + + F F Q+F K D L+SSL + ++ ++
Sbjct: 558 TADSYIAEGLDIFKAAFKEFTQKFGKSEVRDLLKSSLNEKVMDLL 602
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.3
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
Frame = +1
Query: 133 QIPSSQSRTMSHSSYV-ASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQVPSLTGKE 309
Q+ S H+ Y+ AS M K L ++ ++ I+ A SL G +
Sbjct: 456 QVALSDKPVNLHTLYIKASSSEMRSRKRAMDLQLSRSVVIIR--ISDLAGRIRVSLQGDD 513
Query: 310 DDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQLSQTRSQRVRAAMFPETLEEG---IEIP 480
+ G F + + F + D LS+ + +M P + + I+IP
Sbjct: 514 AVYVSGRSPSFAASRPSSVDFMSQSTDS----LSKNDTTASNGSMTPSSSQNNSVIIDIP 569
Query: 481 STQLDPAQPTAVQRLAEPSQMLKHAV 558
+ D A ++ LAEP ++ ++
Sbjct: 570 RSHFDNAGEVCLENLAEPDEIADDSI 595
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 435 TDSLRSSLRKLLIHIINLFLSESLSKTLIKVKHKLVTFHLIIFL 304
++S+ S LRK L+ +++ L+ L+K L+T HL +F+
Sbjct: 121 SNSIESHLRKCLMVLLSRVDEIDLADVLVKTVLPLITKHLRLFV 164
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 235 QNSYLVDSGIN-SGAATQVPS-LTGKEDDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQL 408
+N +D+ ++ + T V L KE+ + + DLD+ + F + ++ ++
Sbjct: 22 ENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEP 81
Query: 409 SQTRSQRVRAAMFPETLEEGIEIP 480
+ + P T+EE +E+P
Sbjct: 82 TIYNLPTFKKKQEPNTIEENLEVP 105
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = +1
Query: 244 YLVDSGINSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQLSQTRS 423
++VD+ NS ++ + + ++ D+ +D+D G+T + + L
Sbjct: 624 FIVDNNPNSERRGEL-CIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEE 682
Query: 424 QRVRAAMFPETLE------EGIEIPSTQLDPAQ 504
+ V AM PE LE G E+ +LDPAQ
Sbjct: 683 ETVMIAMSPEDLEASRQMQAGYEV-KEELDPAQ 714
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 532 PSQMLKHAVVNLINYQDDADLATRAIPELIK 624
PS+MLK V+ +NY++ + + AIP L++
Sbjct: 257 PSEMLK--VLKKVNYKEPSSIQRAAIPVLLQ 285
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 323 KVTNLCLTLIRVLLRDSLKNKLMI*INSFLKLDLKESVRLCFLKRWRKELKFHRH 487
K+TNL + +RDS ++L + FL S +C +KR+ F+RH
Sbjct: 34 KITNLGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFLFNKFFNRH 88
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 262 INSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGFTQE 381
+NS A ++ + E D+ME D+L+ L++G + +E
Sbjct: 765 LNSELADKLAQIRHLESDKMELDKLVHHLNRGIEEANIEE 804
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = +1
Query: 328 DQLMFDLDQGFAQGFTQEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQP 507
D + +L++ FA ++EQ++ ++L+ Q ++ + LEE I+ S+ ++ +
Sbjct: 178 DTNLTNLEKLFAD--SREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKI 235
Query: 508 TAVQRL 525
A QRL
Sbjct: 236 NAEQRL 241
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 429 SLRSSLRKLLIHIINLFLSESLSKTLIKVKH 337
+LRS ++ +L+ II++ ++SL + L KH
Sbjct: 340 TLRSKVQDILLRIISVCGTKSLLRNLTNAKH 370
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 439 AMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHAVVNLINYQDDADLATRAIPEL 618
+ FP L E I + S + Q +++ A+P + ++L + + A+LA RA E
Sbjct: 16 SQFPYDLNEKIPLSSNSVWTLQTGSIRESAQPCSVFS---ISLSTHPEWAELADRAC-ET 71
Query: 619 IKLL 630
+K L
Sbjct: 72 MKTL 75
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +1
Query: 385 VDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHAVVN 564
+D ++QQ S+ ++ A E+G+ PS + P V+ + ++HA ++
Sbjct: 773 LDSLSQQ-SKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQVKLAFAQKKYVEHAFID 831
Query: 565 LINYQDDADL 594
DA L
Sbjct: 832 FAGVDADATL 841
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +1
Query: 406 LSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHAVVNLINYQDD 585
LS TR++ A + +G +P ++D + +A +A S + + VN I +D
Sbjct: 445 LSFTRTRDSHFAFNLPRVRQGQSLPIKRVDALRSSA-NSIA--SSIRRRHPVN-IQEDED 500
Query: 586 ADLATRAIPELIKL 627
AD++T ++PE L
Sbjct: 501 ADISTVSLPEAAHL 514
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 451 ETLEEGIEIPSTQLDPAQPTAVQRLAEPSQ 540
+T+ EG+ +PS LD + + +R AE S+
Sbjct: 1019 DTMTEGVALPSATLDSDKSSLHKRSAELSR 1048
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,551
Number of Sequences: 5004
Number of extensions: 52814
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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