Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h09f
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0195 + 32256771-32258792                                         38   0.005
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337...    31   1.0  
03_06_0146 - 31976538-31978643,31978653-31978751                       31   1.0  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    29   2.4  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    28   5.4  
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868...    28   5.4  

>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +1

Query: 232 QQNSYLVDSGINSGAATQVPSLTGKED--DEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQ 405
           + N+  VDS I+  AAT+V + +G+ED  DE +GD   FD + G  +    +++ D  ++
Sbjct: 120 ESNNDHVDSNID--AATEVTTFSGEEDLDDETDGDIECFDEEDGICEENPDDEIFDDEEE 177

Query: 406 LSQTRSQRVRAAMFPETLEEGIEIPSTQLD 495
            S    + + ++      +E IE    + D
Sbjct: 178 ESDPEEEDIGSSDLETDSDEYIESTDEESD 207


>08_01_0380 -
           3376475-3377116,3377722-3377919,3378381-3378556,
           3378681-3379703,3380476-3380593
          Length = 718

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 394 MNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPT 510
           M + +S++    V+ A FP+ LE G+EI S +  P   T
Sbjct: 174 MTKDVSKSNEDAVKNAPFPQILEVGMEICSKEASPVSHT 212


>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 232 QQNSYLVDSGINSGAATQVPSLTGKED--DEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQ 405
           + N+  VDS I   AA +  + +G+ED  DE +GD   FD D G  +    +++ D +++
Sbjct: 130 ESNNDHVDSNI---AAAEDTTFSGEEDLDDETDGDIECFDEDDGICEENPDDEIFDDDEE 186

Query: 406 LS 411
            S
Sbjct: 187 ES 188


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 382 QVDDMNQQLSQTR--SQRVRAAMFPETLEEGIEIP-STQLDPAQPTAVQRLAEPS 537
           QV+    Q+ Q    S+  +    P T +  ++IP S  L  AQP++V+RL EPS
Sbjct: 629 QVEKTRIQVQQLHNFSREQQGMPGPTTAKADLDIPESVGLYAAQPSSVKRLIEPS 683


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 445 FPETLEEGIEIPSTQLDPAQPTA--VQRLAEPSQMLKHAVVNLI-NYQDDADLATRAIPE 615
           FPE L    ++ +T L    P    V+    P Q L+  + NL  NY+DD    TRA   
Sbjct: 226 FPEHLYFSCDLETTFLTFLAPQIKPVEPAVSPEQ-LRDCLRNLKKNYKDDTTKVTRAFQI 284

Query: 616 LIKLL 630
           L+K++
Sbjct: 285 LLKII 289


>01_06_0115 +
           26585481-26586401,26586501-26586556,26586747-26586876,
           26587396-26587506,26587606-26587674,26588125-26588198,
           26588446-26588581,26588702-26588795,26588901-26589000,
           26589100-26589224,26589597-26589634,26589662-26589742,
           26589868-26589972,26590102-26590166,26590371-26590572,
           26591073-26591159,26591238-26591294,26591369-26591458,
           26591572-26591658,26592204-26592278,26592363-26592463,
           26592565-26592655
          Length = 964

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +1

Query: 307 EDDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEI-PS 483
           +DD+ + D    D D+       +E+ ++  ++LS  R+  V   +    L +   + P 
Sbjct: 209 DDDDDDDDDDDDDDDEDEEAEEEEEEEEEEEEELSYWRNDFVYGDIVWARLGKRQPVWPG 268

Query: 484 TQLDPAQPTAVQRLAEPSQMLKHAVV 561
             +DPAQP A Q L  P Q    AV+
Sbjct: 269 VVVDPAQPAAAQAL--PPQPRSGAVL 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,103
Number of Sequences: 37544
Number of extensions: 367987
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)