Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13h09f
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 50 1e-06
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 32 0.40
Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81464-1|CAE17676.1| 131|Caenorhabditis elegans Hypothetical pr... 29 2.1
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 28 4.9
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 28 4.9
Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 28 6.5
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 27 8.6
U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/75 (30%), Positives = 47/75 (62%)
Frame = +1
Query: 412 QTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHAVVNLINYQDDAD 591
+TR+ R+R+AMFP+ + +T + + V+ + P+Q LK +V++L+ Y+ D
Sbjct: 18 ETRTSRIRSAMFPDWIPPTSAAEATN---STTSIVEMMQMPTQQLKQSVMDLLTYEGSND 74
Query: 592 LATRAIPELIKLLND 636
++ ++P+L+KL+ D
Sbjct: 75 MSGLSLPDLVKLMCD 89
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/75 (30%), Positives = 47/75 (62%)
Frame = +1
Query: 412 QTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHAVVNLINYQDDAD 591
+TR+ R+R+AMFP+ + +T + + V+ + P+Q LK +V++L+ Y+ D
Sbjct: 18 ETRTSRIRSAMFPDWIPPTSAAEATN---STTSIVEMMQMPTQQLKQSVMDLLTYEGSND 74
Query: 592 LATRAIPELIKLLND 636
++ ++P+L+KL+ D
Sbjct: 75 MSGLSLPDLVKLMCD 89
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
protein protein10, isoform b protein.
Length = 1189
Score = 31.9 bits (69), Expect = 0.40
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Frame = +1
Query: 166 HSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQVPSLTGKEDDEMEGDQLMFD 345
HS V D N L W S L G + + T L ++E L
Sbjct: 913 HSVEVVLDCAAGENPNDYFLQWHVWSLLYSVGYRTMSKTSETRLHRNYSSQLEASSL--- 969
Query: 346 LDQGFAQGFTQEQVDDMNQQLSQTRSQRVRAAMFP-----ETLEEGIEIPSTQLDPAQPT 510
+A F + +DD ++ + RS R A F +++ E +IPS + AQ +
Sbjct: 970 --SKYAL-FVLQHIDDDEERSTAVRSLLDRIARFTDNDMFDSISEQFDIPSEWIADAQFS 1026
Query: 511 AVQRLAEPSQMLKHAV 558
+ + + +Q+ + AV
Sbjct: 1027 IAKSVDDSTQLFELAV 1042
>Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical
protein C05B5.3 protein.
Length = 401
Score = 31.1 bits (67), Expect = 0.70
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 154 RTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQVPSLTGKE-DDEMEGD 330
RT + + +VP + + QQ +++ + D NS T P+ G + +G
Sbjct: 88 RTSQSTGQINGNVPGSSSSNQQPVIYIARAGS-DKYKNSEVTTSTPTPNGFNFGNGFQGG 146
Query: 331 QLMFDLDQGFAQGFTQEQVDDMNQQLSQTRSQR 429
Q + + GF+ GF Q + NQ L+Q Q+
Sbjct: 147 Q---NQNTGFSSGFFNNQNQNSNQNLNQNNFQQ 176
>Z81464-1|CAE17676.1| 131|Caenorhabditis elegans Hypothetical
protein B0462.4 protein.
Length = 131
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 127 SYQIPSSQSRTMSHSSYV---ASDVPMAPNKEQQTLMWQQN 240
+Y+ PS++S T +HS ++ DVP+ P QT + +N
Sbjct: 39 NYRRPSTESTTSNHSIHIPVGVDDVPVLPTSTMQTPHFTKN 79
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +1
Query: 121 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQ---QTLMWQQNSYLVDSGINSGAATQVP 291
I+ Y IP +++ H S + + A E ++ + ++GI A TQ
Sbjct: 238 ILGYMIPKAEAIKEGHRSRMQNAQERASKAETISTASMPIMDSRGFDENGIGGNATTQTI 297
Query: 292 SLTGKEDDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQLSQT 417
S T QL D D ++GF +E V NQ+L T
Sbjct: 298 SFTTVI-------QLQEDEDIKLSEGFNEEYVLSSNQKLGLT 332
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 271 GAATQVPSLTGKEDDEM 321
GAAT+VP L GK DDE+
Sbjct: 304 GAATRVPLLRGKTDDEI 320
>Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 SGINSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGFT--QEQVDDMNQQLSQTRSQR 429
SG+++ T V +L+ D + + D+L + A T Q VD +NQ+ +T SQ
Sbjct: 144 SGLDTSEFTGVAALSAIADLQQQMDELKNTMRDAIAMSMTDLQNDVDRVNQK-QETLSQF 202
Query: 430 VRAAMFPETLEEG-IEIPSTQLDPAQP 507
+ F T EG ++ P + P++P
Sbjct: 203 FK--KFIGTSNEGRVQDPFSLKVPSRP 227
>Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 SGINSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGFT--QEQVDDMNQQLSQTRSQR 429
SG+++ T V +L+ D + + D+L + A T Q VD +NQ+ +T SQ
Sbjct: 144 SGLDTSEFTGVAALSAIADLQQQMDELKNTMRDAIAMSMTDLQNDVDRVNQK-QETLSQF 202
Query: 430 VRAAMFPETLEEG-IEIPSTQLDPAQP 507
+ F T EG ++ P + P++P
Sbjct: 203 FK--KFIGTSNEGRVQDPFSLKVPSRP 227
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 499 AQPTAVQRLAEPSQMLKHAVVNLINYQDDADLATRAIPELI 621
A P A+QRL + +QML + ++N+ ++ L +A+P+++
Sbjct: 451 ASPDAIQRLEDINQMLTN-IINVSSWLILNALVPKALPDMV 490
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 483 DTAGSRSTNCCPAFS*TFPDVKACCGEPHQLSR*C 587
D + +RST+CCP S ++ C +P + R C
Sbjct: 221 DMSSNRSTDCCPVCS-KDHNIWLCDADPRAIKRVC 254
>U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical
protein C29H12.6 protein.
Length = 316
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 310 DDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQLSQTRSQR 429
DDE+ D+ +++LDQ + Q + +++ + + + R+QR
Sbjct: 263 DDELARDEFLYELDQQIHE--LQMRSEELREMVDRARTQR 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,169
Number of Sequences: 27780
Number of extensions: 307483
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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