Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h06f
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.23 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   8.5  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 66  YMMGLITGLIKRLLKLALYIAVFAIAVVLIPNIPPYTKFSSIKLEPTKPRTGILESN-GL 242
           Y  G I G I + L  A+ +   A      P++ P       K+EP +   GIL  N G 
Sbjct: 575 YERGFI-GDIYQFLYNAVNVGSVAFDATFFPSLLPKKTMDGSKIEPPESSKGILNVNLGC 633

Query: 243 LNNAEQL 263
           +NN  +L
Sbjct: 634 VNNLTEL 640


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -1

Query: 294 MLLVPAISLYIVVQHYLEAH---SIP-IYLF*ALWV 199
           +LL+PA+   I +  Y+E H   SIP I++F  L+V
Sbjct: 64  LLLIPALFTLIWIYKYIEPHSLISIPGIFVFLGLYV 99


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 214 EQVYWNRMGF*IMLNNYIK-GNCW 282
           E++Y N+ GF I  NNY +  NC+
Sbjct: 304 EKIYMNKDGFYITFNNYREASNCY 327


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 364  PPAVSFTISPVAKLVYNSPLKVWNASGPSNFPLYSCSALFRSPFDSNIPVLGFVGS 197
            PPA    ++PV      +P  V NA  PS+ P          P   N+PV   + S
Sbjct: 1448 PPAPMHAVAPVQP---KAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPS 1500


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 405 GLAYEHICGRPLGFVIDEKTKTLYVADAYHGIWKVDLIT 521
           G+ +  I   P+   I+ +TK     +AYHG W  DL T
Sbjct: 76  GMGFTAIWISPIIKNIEGRTK---YGEAYHGYWPQDLYT 111


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -3

Query: 553 TRGDTSNCFLSVIRSTFQIP*YASATYKVFVFSSITKPNGLPQICS*ASPLQGCPILVTK 374
           T+G+T+N    +I+   ++P + ++  K+    + TK + +P +    SP+     +  K
Sbjct: 373 TKGNTNNMKPLLIKLFTKLPAHITSITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIK 432

Query: 373 VT*PPAVSFTISPVAKLV-YNSPLKVWNASGPSN 275
            T      F  +   +LV +N     ++AS P N
Sbjct: 433 PTQLSENVFDPTSSGELVIHNFGFLSFSASRPMN 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,061
Number of Sequences: 5004
Number of extensions: 58289
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)