Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h03f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    44   1e-05
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    37   0.002
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    33   0.026
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.42 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   6.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.0  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +1

Query: 424 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAA 603
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+EL+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469

Query: 604 YKFRGRA 624
           Y  + +A
Sbjct: 470 YVRKAQA 476



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 445 EAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 585
           E I     AI+L+P  A  + ++ Q    L   N CI  C  A E++
Sbjct: 451 ECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 430 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 585
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+LEL+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 424 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCD 591
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   +  +  D
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPD 91


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 602 AAALSQFNSKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 423
           A  +SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772

Query: 422 A 420
           A
Sbjct: 773 A 773


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 76  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 201
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 125 WCNSCGCVLHISTKDFNWSN 66
           WC  C C+ H    D+  SN
Sbjct: 366 WCTYCLCLAHYKLGDYEESN 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,845
Number of Sequences: 5004
Number of extensions: 41992
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)