Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13g07r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -2

Query: 744 QHEPSNQDXEDKLYNSIXTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYC 565
           Q + + ++ E ++ ++I  G YD+ +R S E  + G   +  N+    I      TMEY 
Sbjct: 23  QGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYS 81

Query: 564 YKL 556
            +L
Sbjct: 82  VQL 84


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  SGRLERCNEPRVDFRK 59
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  SGRLERCNEPRVDFRK 59
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 301 QPVLEDEYVDLQLQRSG 251
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 744 QHEPSNQDXEDKLYNSIXTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYC 565
           Q + + ++ E ++ ++I  G YD+ +R S E  + G   +  N+    I       MEY 
Sbjct: 23  QGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYS 81

Query: 564 YKL 556
            +L
Sbjct: 82  VQL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,609
Number of Sequences: 438
Number of extensions: 4134
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)