Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13g01r
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.22 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.22 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 394 AKIMMETYNLIVLLRAMGHWA 332
           A + M  +NLI ++  +GHW+
Sbjct: 273 ASVFMRIFNLICMMLLIGHWS 293


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 394 AKIMMETYNLIVLLRAMGHWA 332
           A + M  +NLI ++  +GHW+
Sbjct: 241 ASVFMRIFNLICMMLLIGHWS 261


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 288 G*SCPWHCYTSFQILSARKRDIHQ 217
           G  C WHC+   Q      +D+ Q
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 479 PQTVSCTPCHKYLERCL 529
           P T   T   KYLERCL
Sbjct: 388 PATFQDTLEMKYLERCL 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,721
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)