Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13g01f
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   266   1e-72
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    31   0.19 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    30   0.25 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   3.0  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   5.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.3  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   9.3  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    25   9.3  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  266 bits (653), Expect = 1e-72
 Identities = 122/193 (63%), Positives = 152/193 (78%), Gaps = 2/193 (1%)
 Frame = +2

Query: 68  PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 247
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 248 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 427
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138

Query: 428 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDAS 601
            IGRHA  DQYK+TD V  G G LE+ F P+   + K    V+E+ G+GVA++M+NTD S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198

Query: 602 IIDFAHSSFXFAL 640
           I  FAHSSF  AL
Sbjct: 199 IRGFAHSSFQMAL 211


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 80  ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 256
           I GD + R   + + E      + IE    D+ GME  +K+      +  +++K+  VG+
Sbjct: 26  IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85

Query: 257 KCATITPDEK 286
           K    TP EK
Sbjct: 86  KGILFTPFEK 95


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = -1

Query: 562 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 407
           +L   +Y + C T F    + K  ++ +    CF        + I   +  +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 406 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 278
           Y   YIL N +    S T  + +   + F  F+    F   SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -1

Query: 481 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 338
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 435 PMMMGLSHPVTSLGIFLQIIASLKTVP 355
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 128 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 238
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 370 PENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 245
           PEN TT  ++ GP      F   +  +  L++  GRTF   I
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +2

Query: 359 TVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIK 538
           T F  AI C  I    + W      G     D   +T   +PGA         + G+   
Sbjct: 4   TTFIYAITCLPIFISASSWFSSFSFGESKSTDLVSSTSEKIPGANPASYCADWDRGD--D 61

Query: 539 HVVHEY 556
           HVV +Y
Sbjct: 62  HVVVDY 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,453
Number of Sequences: 5004
Number of extensions: 58768
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)