Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f18f
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 652 CGSSCKACVYEIIASS 605
           CG SC  C Y I  SS
Sbjct: 39  CGDSCHKCKYGIAMSS 54


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 345 TTVEELKIKGNECVKDGKFIEAVLHYTQAIKMDPN 449
           T+V+ L+++G+E    G  +    HY     M P+
Sbjct: 748 TSVKSLRLEGDETPPYGMELTEAEHYALYTAMAPH 782


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 471 CCCAKYSCLDPF 436
           C C   +CLDP+
Sbjct: 315 CTCKAVACLDPY 326


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 474 SFAFLKLDQHYLSLQDANETVRLQPQWAKGYFRRAEVEAASG 599
           +F FL L++H+ + ++A   + L  Q     + R   EA  G
Sbjct: 201 AFGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRDNAEAFGG 242


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 474 SFAFLKLDQHYLSLQDANETVRLQPQWAKGYFRRAEVEAASG 599
           +F FL L++H+ + ++A   + L  Q     + R   EA  G
Sbjct: 201 AFGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRDNAEAFGG 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,563
Number of Sequences: 438
Number of extensions: 3610
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)