Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f17r
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.75 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.00 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 154 PDLLSYFAIVENESKARVKFNLM 86
           P+LL YFA +    K + + NL+
Sbjct: 830 PNLLRYFASIATNPKEQAQLNLL 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.00
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 174 QESRCWFISHSYFV 215
           +++R W I+HSYF+
Sbjct: 223 EQNRSWRITHSYFM 236


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 70  PCGPPPEKPED*TLRF 23
           PC  PP  P++ T+ F
Sbjct: 313 PCTQPPSAPQNLTVNF 328


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 342 NFRVYTISTSILPLKIKWVKDTTFTVNLNIYRANI*AQATPTLQNMNGL 196
           +FR + +STSIL  K    ++T + + +   RA     ++ ++ + NG+
Sbjct: 398 SFREFAVSTSILGDKKTAEENTDYFMPIGRPRAKDYGHSSGSVIDRNGV 446


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 327 TISTSILPLKIKWVKD 280
           +++   LPL I W+KD
Sbjct: 633 SVTRGDLPLSISWLKD 648


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = -2

Query: 316 KHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKY 206
           K+    N +G R     +     S+Y  + H D   Y
Sbjct: 209 KYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 178 SCCSYMGHPDLLSYFAI 128
           S CSYM H  L   F++
Sbjct: 339 SSCSYMAHEKLSYAFSV 355


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 309 LPLKIKWVKDTTFT 268
           LP    W KDTT T
Sbjct: 392 LPAPANWKKDTTRT 405


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 154  DDPCNCSKSRD 186
            DDP NC+   D
Sbjct: 1808 DDPANCAPEED 1818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,468
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)