Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13f16f
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 30 1.4
05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214... 30 1.4
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 2.4
02_05_0015 - 24992253-24993993,24995331-24995695 29 3.2
07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539... 29 4.2
11_06_0156 + 20748472-20748951 28 5.6
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 5.6
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 7.4
01_01_0077 - 585670-585787,585921-586687 28 7.4
10_01_0274 - 2901033-2901778,2902475-2902634 27 9.7
09_04_0092 + 14548110-14548306,14548891-14549029,14549698-145498... 27 9.7
03_01_0427 + 3296717-3296861,3296966-3297210 27 9.7
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 163 RLMEGK*KRMNTLQPTRLYQNLIQNSGRPKRTSANRRRRYLPTAPKRNY*RRKTR 327
R M+ ++ T+ R ++ +++S RP+ S R LP +R Y RR R
Sbjct: 586 RFMQNFLEKETTMPRNRYWKKPVKSSNRPRGQSRQLRGSRLPHQSQRRYGRRSPR 640
>05_06_0041 -
25120961-25121005,25121143-25121194,25121429-25121496,
25122167-25122220,25122473-25122541,25122655-25122714,
25122876-25123048,25123847-25123920,25124472-25124585,
25124688-25124754,25124840-25124904,25125504-25125583,
25125689-25125733,25126235-25126300,25126746-25126901,
25127292-25127516,25127630-25127672,25127997-25128040,
25128191-25128263,25130335-25130414
Length = 550
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 224 FWYSLVGCNVFILFHLPSINRETVFPWL 141
F Y ++ C+ FIL H N T++PW+
Sbjct: 301 FSYYMMICSSFILNHTQETNEWTIYPWI 328
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 523 PGCACSPGL---LQSLYAHPSAARPNPGH 600
PG AC P L L L HPS A+P+PG+
Sbjct: 10 PGSACIPLLILLLLLLLLHPSEAQPSPGY 38
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 360 AKYVVGDHRNGDAKIELDANKRQFTGMTREEVLKYADDPFWVN 488
AK V+ + GD + K T + RE V YADDP N
Sbjct: 531 AKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSAN 573
>07_03_0368 +
17351199-17351351,17352166-17352243,17353774-17353927,
17353997-17354019,17354242-17354319,17354407-17354466,
17354745-17354805,17355080-17355243
Length = 256
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 186 LSLALHQSRDGFSVAPTSL-IVYYTLKTSFSLRESSPFTINHDLQIAVQGTNVLGLCL 16
L + H S G SVA L +V YT+ ++ + + PF+ +L + ++ +CL
Sbjct: 79 LKILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGELAFLLIQADLFNVCL 136
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 163 RLMEGK*KRMNTLQPTRLYQNLIQNSGRPKRTSANRRRRYLPTAPKRNY*RRKTRPKS*P 342
R +EGK + L T + I SGR KR + +R P++P R RR +R ++
Sbjct: 84 RELEGKAAAGHRLHETMSRRRRI--SGRGKRETKEKRMTRQPSSPSRGCLRR-SRGRAYA 140
Query: 343 GW 348
GW
Sbjct: 141 GW 142
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 643 ASTKSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 464
AS+ S+ R P++ L + PH+ A +M A PA+ + T + F+ G S
Sbjct: 654 ASSSSAAPRAPAAPLALHAPAPHIRAPSMAAPPPAAPRGRTMPPTTG--RYSFSYGGLSL 711
Query: 463 YFST 452
++T
Sbjct: 712 SYTT 715
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 571 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 452
G++++TA + + NT++ Q++ Q GSSA+ ST
Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 540 AGAIAVIVRAPKCGPPEPR 596
AGA++++VR P PP+P+
Sbjct: 168 AGAVSIVVRDPSLPPPKPK 186
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 523 PGCACSPGLLQSLYAHPSAARP--NPGHG 603
PGC+CSP Y P+ P +PG+G
Sbjct: 185 PGCSCSPPSTPPGYGQPAPECPPADPGYG 213
>09_04_0092 +
14548110-14548306,14548891-14549029,14549698-14549815,
14549901-14550127
Length = 226
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 526 GCACSPGLLQSLYAHPSAARPNPGHG 603
G SPG+L LY RP+PG G
Sbjct: 2 GVKPSPGVLDGLYGVQLGRRPSPGDG 27
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +1
Query: 496 GRCSCCSGWPG--CACSPGLLQ 555
G C+ SG+PG C C PG Q
Sbjct: 60 GNCTAASGFPGYRCECEPGWKQ 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,880,082
Number of Sequences: 37544
Number of extensions: 450659
Number of successful extensions: 1464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -