Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f16f
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.27 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    26   0.36 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   1.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = -3

Query: 637 TKSSPTRG-PSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFT---QKGS 470
           TK+S T G PS+   L      LG  T     P    S  + NN     R  T    K S
Sbjct: 431 TKASATFGIPST--TLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKAS 488

Query: 469 SAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFASDM 350
            A+   SS +  +  R        A+PF  SPTT+  +D+
Sbjct: 489 KAFGIPSSTLYKIARR---EGIRLAAPFNASPTTWSPADL 525


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 516 WVAWLCMLAGAIAVIVRAPKCGPPEPRTWY-ELGPLVGLDLVD 641
           WV   C     I VI++ P CGP     ++ +L PL  L   D
Sbjct: 9   WVGGFCHSIIQIPVIIQLPFCGPNVIDHYFRDLQPLFKLACTD 51


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 505 SCCSGWPGCA-CSPGLLQSLYAHPSA 579
           S CS  P  A  S G L  +Y HPSA
Sbjct: 118 STCSSHPTAAFISYGTLFFIYVHPSA 143


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 463 YFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFASDMST 344
           Y+    L       +L  S  FA   +W P T+FA+D ++
Sbjct: 91  YWKDERLAFSQEEEVLTLSGDFAEK-IWVPDTFFANDKNS 129


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 447 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 572
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 447 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 572
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -3

Query: 400 FASPFLWSPTTYFASDMSTRV 338
           F    +W+PT Y +++ S+ +
Sbjct: 92  FVRDLIWTPTVYVSNEPSSAI 112


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 230 IRFWYSLVGCNVFILFHLPSINRETVFPWLRHR*LCTTLLKPVFH 96
           I  WYS  G    I   + SIN  T    +    + T +L  +FH
Sbjct: 282 IIMWYSPFGIMCLIAGKIMSINNLTATAQMLGLYMVTVILGLLFH 326


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 507 VLFWVAWLCMLAGAIAVIVRAP 572
           +  WV  L   AG + +I +AP
Sbjct: 484 LFLWVFTLACTAGTLGIIFQAP 505


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 548 YCSHCTRTQVRPARTQDMVRTRSPGR 625
           +CSHC R  V+ A  +  +R  +  R
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGER 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,057
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)