Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f11f
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    68   1e-12
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    30   0.34 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.60 
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    29   0.79 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    28   1.0  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.4  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    27   3.2  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   5.6  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   7.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 32/49 (65%), Positives = 36/49 (73%)
 Frame = +2

Query: 515 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGL 661
           R+A YN KKA KP  + KS + LDVKPWDDET M  LE+AVRSI  DGL
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGL 159


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -3

Query: 168 FRSNQTFSCNKAAMLIIPKFRFELYL-----NTIKTLVH-TIKLNFYVNKVNRANLTA 13
           FRSN + S       IIP     LYL     +TI T+ H T ++   +N+VN   L A
Sbjct: 700 FRSNTSGSAKSEGYYIIPTTEKSLYLPLRNRSTIDTISHSTSRITSRMNRVNNRRLAA 757


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 251 TELSTKVISLENENKDLKKAIDDLRN 328
           T+  +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 86  VFKYNSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKM 217
           + + N+N   G+IS A  L   V+L++ ++N    A  E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 155 WLDRNVYNDAEKAYYESLSKMDSVATLAGVP-NTELSTKVISLENENKDLKKAIDDLRNL 331
           +++ N+ N+ +K   ESL K         +  NT+LS K+   ENE +DL +    L++ 
Sbjct: 5   FINSNINNE-DKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSY 63

Query: 332 VISLQVR 352
           ++ L+ R
Sbjct: 64  LVKLEAR 70


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 200 ESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 367
           E  + M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E
Sbjct: 242 ERTAAMQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 592 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 488
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 140 LHEKVWLDRNVYNDAEKAY--YESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAI 313
           LHEK  +D N Y DA      +E  SK    +T   +   ++  ++      +K +++ I
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 158 LDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVI 337
           +DR V +  +  YYESL K   +A      N +L   +I      + ++    D R + +
Sbjct: 471 VDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLERDLIRASRHPELIELGEGDKRGITL 530

Query: 338 SL 343
            +
Sbjct: 531 DI 532


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 209  SKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQ 346
            +KM SV         EL  ++ SLE  NKD    +  LR+ + SL+
Sbjct: 1475 AKMFSVQVQYEKREQELQKRIASLEKVNKDSLIDVRALRDRIASLE 1520


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 245 PNTELSTKVISLENENKDLKKAID 316
           PNTEL+  +  L    KDLK A++
Sbjct: 37  PNTELTYAIDELSETLKDLKAAVE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,590
Number of Sequences: 5004
Number of extensions: 39547
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)