Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f11f
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    58   8e-09
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    56   3e-08
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    56   3e-08
07_01_0243 - 1783903-1784658                                           29   3.3  
01_06_1261 - 35826513-35828941,35829201-35829294                       28   5.8  
08_01_0449 + 3965959-3966081,3966462-3966714,3967188-3967551,396...    28   7.6  
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214...    28   7.6  
07_03_1501 - 27005542-27005976,27006657-27008660                       28   7.6  
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    28   7.6  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +2

Query: 515 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGL 661
           R AA  A   KK     KS+++LDVKPWDDETDMA LE+AVR++  +GL
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGL 187


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/49 (55%), Positives = 34/49 (69%)
 Frame = +2

Query: 515 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGL 661
           R AA  A   KK     KS+++LDVKPWDDETDM  LE+AVR++  +GL
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGL 171


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +2

Query: 533 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGL 661
           +K + K     KS+++LDVKPWDDETDM  LE+AVRS+  +GL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGL 166


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 339 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 458
           +C S++ P   P + PL+  +Q +L++LLL   + MM+L+
Sbjct: 59  SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +2

Query: 188 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 367
           K  +ES S+  +V  LAG  + E+  KVISLE         I+ ++N    LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370


>08_01_0449 +
           3965959-3966081,3966462-3966714,3967188-3967551,
           3967642-3967860,3969106-3969241,3970095-3970346,
           3970459-3970752
          Length = 546

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 150 FSCNKAAMLIIPKFRFELYLNTIKT 76
           + CN++A +++PK+  + YL  +KT
Sbjct: 319 YMCNESATVLLPKYMKDFYLYYLKT 343


>08_01_0264 -
           2142856-2143152,2143667-2143829,2143915-2143992,
           2144097-2144162,2144941-2145098
          Length = 253

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 275 SLENENKDLKKAIDDLRNLVISLQVRVETLE 367
           SLE++ K+LK   D+LR+    L+V  ETLE
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLE 176


>07_03_1501 - 27005542-27005976,27006657-27008660
          Length = 812

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 236 AGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQV 349
           AGVP+T+++ +++ +  E++  +  +  +R  VI L +
Sbjct: 707 AGVPDTDIAGRLVEILKEHRTPRVKVPRMRRFVIELAI 744


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 251 TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 358
           TEL  +   L+ +N++ + AI D+  L+I  + RVE
Sbjct: 326 TELENEATELKQKNEEERVAIQDMEALLIKRRRRVE 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,023
Number of Sequences: 37544
Number of extensions: 220558
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)