Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13f02f
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   1.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   8.5  

>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 361 SQLSRSC*ILSFKGISFSCYHYK 293
           S+LS  C  ++F+GI++ C+  K
Sbjct: 13  SELSNDCETVNFRGIAYKCFFTK 35


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 73  CIRETGPATSLRSXEYQNGLYEKK-QLSTNEAXNCVQEII*KRNFTE 210
           C+   G +  +   +   G+  KK QLS NE+   VQE++  R  TE
Sbjct: 585 CVLSAGTSKYVCLYDIITGVLIKKFQLSKNESLQGVQEMLNSRKMTE 631


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 55  DNIGIECIRET-GPATSLRSXEYQNGLYEKKQLSTNEAXNCVQEII 189
           D   IE +      + SLR+   Q+ L  K   +T++A NC++ I+
Sbjct: 241 DKFRIEALHANFSVSISLRNKAIQHLLKSKIAANTDKAINCIEFIL 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,412
Number of Sequences: 5004
Number of extensions: 21538
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)