Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e24r
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 264 1e-71
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 185 5e-48
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 84 2e-17
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.67
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 1.2
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 2.1
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 27 2.7
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 26 4.7
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 4.7
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 26 4.7
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 6.3
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 8.3
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 264 bits (646), Expect = 1e-71
Identities = 128/195 (65%), Positives = 157/195 (80%)
Frame = -1
Query: 718 AQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLV 539
AQ+II+A K+SMG DIS +DL NI FA RV+ LSNYRKQ+ YL KMN VAPNL+ L+
Sbjct: 244 AQSIINAGKVSMGQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELI 303
Query: 538 GDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRA 359
G+ VGARLIS AGSLTNL+K PAST+QILGAEKALFRALKTR NTPKYG++YHS+FIG+A
Sbjct: 304 GEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFIGKA 363
Query: 358 GLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEV 179
G KNKGRISR+LANKCSIASRID FS+ + FG+ LR+QVE+RL F++TG P +N
Sbjct: 364 GAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLNFFDTGVAPTRNSIA 423
Query: 178 MKEAMDEVQKAVDAE 134
M EA ++ +V+ +
Sbjct: 424 MAEAYEKALSSVNID 438
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 185 bits (451), Expect = 5e-48
Identities = 93/178 (52%), Positives = 134/178 (75%), Gaps = 3/178 (1%)
Frame = -1
Query: 724 EKAQAII-DASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLS 548
E+ +A + A+++SMG +I+ DL NI M A +V+ L++YR Q+SEYL ++M ++APNL+
Sbjct: 229 EEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSEYLRNRMQAIAPNLT 288
Query: 547 TLVGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFI 368
LVG+ VGARLI+ AGSL NLAK PAST+QILGAEKALFRALKT+ +TPKYGL+YH++ +
Sbjct: 289 ALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKALFRALKTKHSTPKYGLIYHASLV 348
Query: 367 GRAGLKNKGRISRYLANKCSIASRIDCFSEMQ--SAVFGEKLRQQVEDRLKFYETGDI 200
G+A KNKG+I+R LA K +++ R+D S+ + G + R +VE+RL+ E G +
Sbjct: 349 GQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRLRSLEGGKL 406
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 83.8 bits (198), Expect = 2e-17
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%)
Frame = -1
Query: 667 PVDLI-NIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLT 491
P ++I N++ + L +++I EY+ S+++ VAPNLS +VG A LI AG LT
Sbjct: 204 PDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLT 263
Query: 490 NLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISRYLANKC 311
L K+PA L LG + + + + YG LY S + + + + R A K
Sbjct: 264 RLGKFPACNLPALGKRRLTTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKV 323
Query: 310 SIASRIDCFSEMQSAVFGEKLRQQVEDRLK 221
++A+RID E FG R++VE +++
Sbjct: 324 ALAARIDSIHEYPDGSFGISARKEVERKIE 353
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.67
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -1
Query: 709 IIDASKMSMGMDISPV-DLINIQMFAGRVVALSNYRKQISE-YLHSKMNSVAPNLSTLVG 536
++ +K + PV DL+N V N I+ +LH+ N+ A N+ +G
Sbjct: 375 VLTFTKTMDAAQVWPVTDLVNYSSERKHVFIEFNSDSGITSLHLHASSNTNADNIIRALG 434
Query: 535 DQVGARLISKAGSLTNLAKYPASTLQILGAEKALFR 428
D G+ ++A L +A S + L ++ AL R
Sbjct: 435 DVAGS---ARAAGLREIAAASGSPMPKLPSDSALHR 467
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 202 IPKKNIEVMKEAMDEVQKAVDAE 134
+P+ +EV +A DE++KA+DAE
Sbjct: 699 LPESELEVRLKAADELKKALDAE 721
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -1
Query: 616 SNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGA 446
S Y K + E +H K+NS NL V + I + S N+A +P L+++GA
Sbjct: 383 SYYHKDLEESVHQKLNS---NLEKRV-----EKYIKHSCSQRNVADHPDFALKVVGA 431
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -1
Query: 583 HSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGA--EKALFRALKTRS 410
H +++SV + T + D + A + SL K P +LQIL E + ++K +
Sbjct: 111 HGRVSSVTTS-KTFIFDGISAVKGMRYHSLY-ANKIPIDSLQILAQSDEDNIVMSIKA-T 167
Query: 409 NTPKYGLLYHSTFIG 365
P +G+LYH +G
Sbjct: 168 KFPHFGILYHPESVG 182
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 359 GTSNERGVV*QTIFWSIRTCLQSSEESFFCTQYLQCRCGILGK-VGQGASLGDQPGS 526
G SNER ++ Q+ F + CL +S + +QY+ C GK +G L +P S
Sbjct: 194 GLSNERTILLQSAFMPAKACLCASILN-NSSQYINDACFNYGKFLGLSLQLAHKPVS 249
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +2
Query: 419 LQSSEESFFCTQYLQCRCGILGKVGQGASLGDQPGSNLISNQRRQIRCYGVHLTMQV 589
L EE + Y CRCG LG G + D + N R + C G LT+QV
Sbjct: 82 LSEFEELDNGSYYYPCRCGDLG--GYVVTEDD------LENNRSVVPCMGCSLTIQV 130
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 619 LSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARL 515
LSN + ++ +L SK + +LS++VGD G RL
Sbjct: 81 LSNANEALTTFLQSKNTTADLDLSSIVGDN-GPRL 114
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = -1
Query: 310 SIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQK 149
SI ++++ ++++ +KL+ Q RL E+GD + + + + EA D VQK
Sbjct: 93 SIVNQLEYLNDLEEL---KKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQK 143
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -1
Query: 628 VVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILG 449
++ LSN+ S + + + + L GD + L A S N YP + ++
Sbjct: 287 LIGLSNFVNSFSSFFELISHFLIKSAQNLKGDSLLDFLFDYARSCQNTISYPIALQCLIY 346
Query: 448 AEKALFRALKTRSNTP-KYGLLYHSTFI 368
F+ L+ YG + S F+
Sbjct: 347 CSNPYFKRLELALKVSCAYGHIDSSLFL 374
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 485 CQVSRIYIADIGCRKSSLPSSEDTFEYSKIWSAIPLHVHW 366
C R+Y IGC LP S F W+ P H+HW
Sbjct: 411 CPEDRLYPLFIGC--FLLPISMFWFA----WTCYPHHIHW 444
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -1
Query: 640 FAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTL 461
F RVVAL YR S+ L V +S L GD + G+ + +P
Sbjct: 4 FPTRVVALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGN-RKIGSFPKDFT 62
Query: 460 QILGAEKALF 431
+ AE A+F
Sbjct: 63 E--PAEDAVF 70
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 149 LLNFVHSFLHHFNILFGNITGLIEF 223
+LN VH ++H FNIL + +I F
Sbjct: 115 ILNMVHMYVHVFNILILLLAPVIIF 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,338
Number of Sequences: 5004
Number of extensions: 59031
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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