Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e24r
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A pr... 304 2e-82
BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A (5... 304 2e-82
BC018421-1|AAH18421.1| 447|Homo sapiens Unknown (protein for IM... 304 2e-82
AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A (5... 304 2e-82
Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein. 302 7e-82
AL049712-3|CAI22416.1| 218|Homo sapiens nucleolar protein 5A (5... 273 4e-73
BC032592-1|AAH32592.1| 529|Homo sapiens nucleolar protein NOP5/... 175 1e-43
BC009306-1|AAH09306.1| 522|Homo sapiens NOP5/NOP58 protein prot... 175 1e-43
AF263608-1|AAF91394.1| 529|Homo sapiens nucleolar protein 5 pro... 175 1e-43
AF123534-1|AAD27610.1| 529|Homo sapiens nucleolar protein NOP5/... 175 1e-43
AC064836-1|AAY24145.1| 529|Homo sapiens unknown protein. 175 1e-43
BC117389-1|AAI17390.1| 499|Homo sapiens PRP31 pre-mRNA processi... 100 5e-21
AY040822-1|AAK77986.1| 499|Homo sapiens U4/U6 snRNP-associated ... 99 8e-21
AF308303-1|AAG48270.1| 278|Homo sapiens serologically defined b... 99 1e-20
AK098547-1|BAC05329.1| 364|Homo sapiens protein ( Homo sapiens ... 98 2e-20
AL359644-1|CAH70729.1| 123|Homo sapiens stomatin protein. 30 9.6
AL161784-1|CAH72706.1| 123|Homo sapiens stomatin protein. 30 9.6
>BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A
protein.
Length = 594
Score = 304 bits (747), Expect = 2e-82
Identities = 143/192 (74%), Positives = 172/192 (89%)
Frame = -1
Query: 721 KAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTL 542
KA+AI+DAS+ SMGMDIS +DLINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L
Sbjct: 240 KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSAL 299
Query: 541 VGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGR 362
+G+ VGARLI+ AGSLTNLAKYPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGR
Sbjct: 300 IGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGR 359
Query: 361 AGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIE 182
A KNKGRISRYLANKCSIASRIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++
Sbjct: 360 AAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLD 419
Query: 181 VMKEAMDEVQKA 146
VMKEAM + ++A
Sbjct: 420 VMKEAMVQAEEA 431
>BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 304 bits (747), Expect = 2e-82
Identities = 143/192 (74%), Positives = 172/192 (89%)
Frame = -1
Query: 721 KAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTL 542
KA+AI+DAS+ SMGMDIS +DLINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L
Sbjct: 240 KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSAL 299
Query: 541 VGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGR 362
+G+ VGARLI+ AGSLTNLAKYPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGR
Sbjct: 300 IGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGR 359
Query: 361 AGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIE 182
A KNKGRISRYLANKCSIASRIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++
Sbjct: 360 AAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLD 419
Query: 181 VMKEAMDEVQKA 146
VMKEAM + ++A
Sbjct: 420 VMKEAMVQAEEA 431
>BC018421-1|AAH18421.1| 447|Homo sapiens Unknown (protein for
IMAGE:4448930) protein.
Length = 447
Score = 304 bits (747), Expect = 2e-82
Identities = 143/192 (74%), Positives = 172/192 (89%)
Frame = -1
Query: 721 KAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTL 542
KA+AI+DAS+ SMGMDIS +DLINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L
Sbjct: 236 KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSAL 295
Query: 541 VGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGR 362
+G+ VGARLI+ AGSLTNLAKYPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGR
Sbjct: 296 IGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGR 355
Query: 361 AGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIE 182
A KNKGRISRYLANKCSIASRIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++
Sbjct: 356 AAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLD 415
Query: 181 VMKEAMDEVQKA 146
VMKEAM + ++A
Sbjct: 416 VMKEAMVQAEEA 427
>AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 304 bits (747), Expect = 2e-82
Identities = 143/192 (74%), Positives = 172/192 (89%)
Frame = -1
Query: 721 KAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTL 542
KA+AI+DAS+ SMGMDIS +DLINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L
Sbjct: 240 KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSAL 299
Query: 541 VGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGR 362
+G+ VGARLI+ AGSLTNLAKYPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGR
Sbjct: 300 IGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGR 359
Query: 361 AGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIE 182
A KNKGRISRYLANKCSIASRIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++
Sbjct: 360 AAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLD 419
Query: 181 VMKEAMDEVQKA 146
VMKEAM + ++A
Sbjct: 420 VMKEAMVQAEEA 431
>Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein.
Length = 602
Score = 302 bits (742), Expect = 7e-82
Identities = 142/190 (74%), Positives = 170/190 (89%)
Frame = -1
Query: 721 KAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTL 542
KA+AI+DAS+ SMGMDIS +DLINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L
Sbjct: 246 KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSAL 305
Query: 541 VGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGR 362
+G+ VGARLI+ AGSLTNLAKYPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGR
Sbjct: 306 IGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGR 365
Query: 361 AGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIE 182
A KNKGRISRYLANKCSIASRIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++
Sbjct: 366 AAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLD 425
Query: 181 VMKEAMDEVQ 152
VMKEAM + +
Sbjct: 426 VMKEAMVQAE 435
>AL049712-3|CAI22416.1| 218|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 218
Score = 273 bits (670), Expect = 4e-73
Identities = 128/171 (74%), Positives = 153/171 (89%)
Frame = -1
Query: 658 LINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAK 479
LINI+ F+ RVV+LS YR+ + YL SKM+ VAP+LS L+G+ VGARLI+ AGSLTNLAK
Sbjct: 1 LINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAK 60
Query: 478 YPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISRYLANKCSIAS 299
YPAST+QILGAEKALFRALKTR NTPKYGL++HSTFIGRA KNKGRISRYLANKCSIAS
Sbjct: 61 YPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIAS 120
Query: 298 RIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQKA 146
RIDCFSE+ ++VFGEKLR+QVE+RL FYETG+IP+KN++VMKEAM + ++A
Sbjct: 121 RIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEA 171
>BC032592-1|AAH32592.1| 529|Homo sapiens nucleolar protein
NOP5/NOP58 protein.
Length = 529
Score = 175 bits (426), Expect = 1e-43
Identities = 86/169 (50%), Positives = 122/169 (72%)
Frame = -1
Query: 700 ASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGA 521
A+++SMG ++S D+ NI +V+ +S YR Q+ EYL ++M ++APN++ +VG+ VGA
Sbjct: 237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGA 296
Query: 520 RLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKG 341
RLI+ AGSL NLAK+ AST+QILGAEKALFRALK+R +TPKYGL+YH++ +G+ K+KG
Sbjct: 297 RLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKG 356
Query: 340 RISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPK 194
+ISR LA K +A R D F E S+ G + R ++E RL+ E I K
Sbjct: 357 KISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRK 405
>BC009306-1|AAH09306.1| 522|Homo sapiens NOP5/NOP58 protein
protein.
Length = 522
Score = 175 bits (426), Expect = 1e-43
Identities = 86/169 (50%), Positives = 122/169 (72%)
Frame = -1
Query: 700 ASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGA 521
A+++SMG ++S D+ NI +V+ +S YR Q+ EYL ++M ++APN++ +VG+ VGA
Sbjct: 237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGA 296
Query: 520 RLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKG 341
RLI+ AGSL NLAK+ AST+QILGAEKALFRALK+R +TPKYGL+YH++ +G+ K+KG
Sbjct: 297 RLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKG 356
Query: 340 RISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPK 194
+ISR LA K +A R D F E S+ G + R ++E RL+ E I K
Sbjct: 357 KISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRK 405
>AF263608-1|AAF91394.1| 529|Homo sapiens nucleolar protein 5
protein.
Length = 529
Score = 175 bits (426), Expect = 1e-43
Identities = 86/169 (50%), Positives = 122/169 (72%)
Frame = -1
Query: 700 ASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGA 521
A+++SMG ++S D+ NI +V+ +S YR Q+ EYL ++M ++APN++ +VG+ VGA
Sbjct: 237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGA 296
Query: 520 RLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKG 341
RLI+ AGSL NLAK+ AST+QILGAEKALFRALK+R +TPKYGL+YH++ +G+ K+KG
Sbjct: 297 RLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKG 356
Query: 340 RISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPK 194
+ISR LA K +A R D F E S+ G + R ++E RL+ E I K
Sbjct: 357 KISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRK 405
>AF123534-1|AAD27610.1| 529|Homo sapiens nucleolar protein
NOP5/NOP58 protein.
Length = 529
Score = 175 bits (426), Expect = 1e-43
Identities = 86/169 (50%), Positives = 122/169 (72%)
Frame = -1
Query: 700 ASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGA 521
A+++SMG ++S D+ NI +V+ +S YR Q+ EYL ++M ++APN++ +VG+ VGA
Sbjct: 237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGA 296
Query: 520 RLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKG 341
RLI+ AGSL NLAK+ AST+QILGAEKALFRALK+R +TPKYGL+YH++ +G+ K+KG
Sbjct: 297 RLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKG 356
Query: 340 RISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPK 194
+ISR LA K +A R D F E S+ G + R ++E RL+ E I K
Sbjct: 357 KISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRK 405
>AC064836-1|AAY24145.1| 529|Homo sapiens unknown protein.
Length = 529
Score = 175 bits (426), Expect = 1e-43
Identities = 86/169 (50%), Positives = 122/169 (72%)
Frame = -1
Query: 700 ASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGA 521
A+++SMG ++S D+ NI +V+ +S YR Q+ EYL ++M ++APN++ +VG+ VGA
Sbjct: 237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGA 296
Query: 520 RLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKG 341
RLI+ AGSL NLAK+ AST+QILGAEKALFRALK+R +TPKYGL+YH++ +G+ K+KG
Sbjct: 297 RLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKG 356
Query: 340 RISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPK 194
+ISR LA K +A R D F E S+ G + R ++E RL+ E I K
Sbjct: 357 KISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRK 405
>BC117389-1|AAI17390.1| 499|Homo sapiens PRP31 pre-mRNA processing
factor 31 homolog (S. cerevisiae) protein.
Length = 499
Score = 100 bits (240), Expect = 5e-21
Identities = 50/180 (27%), Positives = 96/180 (53%)
Frame = -1
Query: 688 SMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLIS 509
+ G +S +L ++ + L+ + +I EY+ S+M+ +APNLS ++G A+++
Sbjct: 174 TQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMG 233
Query: 508 KAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISR 329
AG LTNL+K PA + +LGA++ + S P G +YHS + + + +R
Sbjct: 234 VAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAAR 293
Query: 328 YLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQK 149
+A KC++A+R+D F E G +L+ ++E + ++ P K ++ + +D +K
Sbjct: 294 LVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPP-PVKQVKPLPAPLDGQRK 352
>AY040822-1|AAK77986.1| 499|Homo sapiens U4/U6 snRNP-associated 61
kDa protein protein.
Length = 499
Score = 99 bits (238), Expect = 8e-21
Identities = 50/180 (27%), Positives = 95/180 (52%)
Frame = -1
Query: 688 SMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLIS 509
+ G +S +L + + L+ + +I EY+ S+M+ +APNLS ++G A+++
Sbjct: 174 TQGQQLSEEELERLDEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMG 233
Query: 508 KAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISR 329
AG LTNL+K PA + +LGA++ + S P G +YHS + + + +R
Sbjct: 234 VAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAAR 293
Query: 328 YLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQK 149
+A KC++A+R+D F E G +L+ ++E + ++ P K ++ + +D +K
Sbjct: 294 LVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPP-PVKQVKPLPAPLDGQRK 352
>AF308303-1|AAG48270.1| 278|Homo sapiens serologically defined
breast cancer antigen NY-BR-99 protein.
Length = 278
Score = 99.1 bits (236), Expect = 1e-20
Identities = 49/180 (27%), Positives = 95/180 (52%)
Frame = -1
Query: 688 SMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLIS 509
+ G +S +L ++ + L+ + +I EY+ S+M+ +APNLS ++G A+++
Sbjct: 94 TQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMG 153
Query: 508 KAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISR 329
G LTNL+K PA + +LGA++ + S P G +YHS + + + +R
Sbjct: 154 VGGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAAR 213
Query: 328 YLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQK 149
+A KC++A+R+D F E G +L+ ++E + ++ P K ++ + +D +K
Sbjct: 214 LVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPP-PVKQVKPLPAPLDGQRK 272
>AK098547-1|BAC05329.1| 364|Homo sapiens protein ( Homo sapiens
cDNA FLJ25681 fis, clone TST04131. ).
Length = 364
Score = 98.3 bits (234), Expect = 2e-20
Identities = 46/152 (30%), Positives = 84/152 (55%)
Frame = -1
Query: 688 SMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLIS 509
+ G +S +L ++ + L+ + +I EY+ S+M+ +APNLS ++G A+++
Sbjct: 174 TQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMG 233
Query: 508 KAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISR 329
AG LTNL+K PA + +LGA++ + S P G +YHS + + + +R
Sbjct: 234 VAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAAR 293
Query: 328 YLANKCSIASRIDCFSEMQSAVFGEKLRQQVE 233
+A KC++A+R+D F E G +L+ ++E
Sbjct: 294 LVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
>AL359644-1|CAH70729.1| 123|Homo sapiens stomatin protein.
Length = 123
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 582 CRYSEICFL*LLSATTLPANIWMLIK---STGEISIPMDIFEASMI 710
C + + F L + T P +IWM IK + GE++ + EASM+
Sbjct: 30 CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMV 75
>AL161784-1|CAH72706.1| 123|Homo sapiens stomatin protein.
Length = 123
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 582 CRYSEICFL*LLSATTLPANIWMLIK---STGEISIPMDIFEASMI 710
C + + F L + T P +IWM IK + GE++ + EASM+
Sbjct: 30 CGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMV 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,848,409
Number of Sequences: 237096
Number of extensions: 2040738
Number of successful extensions: 4048
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4046
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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