Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e24f
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   172   2e-43
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    97   7e-21
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    30   1.6  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  172 bits (419), Expect = 2e-43
 Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
 Frame = +2

Query: 104 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 283
           +VL+EH+AG+AL ++ EF++    L +V+ +  D  +F+ +V L +F P K+   ALEN 
Sbjct: 7   FVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPFKNTEAALENC 66

Query: 284 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEAL-EIQCTHTGAVPEI 460
           N++SEG+   DL  FL+  LPK+KK     LG+ D KL  +++EA  +++    G + EI
Sbjct: 67  NSISEGLAHPDLTNFLQKSLPKKKKH--VVLGINDSKLAGSLTEAFPDLKLVFGGVITEI 124

Query: 461 LRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQL 631
           LRG R HF  L K L   + S AQL LGHSYSR++VKF+VHRVDNM+IQSIALLDQL
Sbjct: 125 LRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVHRVDNMVIQSIALLDQL 181


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 54/175 (30%), Positives = 99/175 (56%)
 Frame = +2

Query: 107 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENIN 286
           VLFE +AG+A+F+++  ++L   +  + E  +  ++    + L++F+  K+   A+E  +
Sbjct: 3   VLFEVAAGYAVFKLSNEKKLKN-VDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEATS 61

Query: 287 AVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILR 466
            ++EG L + L   L+  + + +K     L V D KLG  I E L + C H  ++ E++R
Sbjct: 62  EITEGKLSKTLKKLLKSSVDETEK-----LAVGDAKLGNLIKEKLSLNCVHDSSINELMR 116

Query: 467 GIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQL 631
           G+R H   L+     +  +   L + HS +R +VKFN  ++D MI+Q+++LLD L
Sbjct: 117 GVRAHIEDLL-AEHKEEMNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDL 170


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 373 TRCTGSQARSS-HQRGPGNSVHAYR-SSPGDFERHTL-SLPLAHQRPYPQSMQCGTAWSW 543
           T C G   RS  H RG    V  Y+  S G      L  LP+    P  Q+MQ  TAW +
Sbjct: 31  TYCGGCNTRSHMHPRGECQRVGCYQCGSMGHATAQALCDLPIGGVTPEAQTMQQETAWGF 90


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/93 (24%), Positives = 36/93 (38%)
 Frame = -2

Query: 462 KISGTAPVCVH*ISRASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGRIPSDTAL 283
           K+S T    VH  +R  +  A S GS    V    FF F    + +   S+  IP+ T +
Sbjct: 136 KLSTTHSPIVHKTARPPIRVASSFGSKGKKVTRKFFFFFNSTRTASTVPSTTVIPTTTRI 195

Query: 282 IFSKATIADLCGWKAIKVTTALKRCKSVTDSST 184
             +  T  +         TT      + T ++T
Sbjct: 196 PTTVTTTTETTTTPQSTTTTTTVPPTTTTSTTT 228


>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 439 YRSSPGDFERHTLSLPLAHQRPYPQSMQCGTAWSWPLILTSSCQVQCSPSGQHDHTINSP 618
           YRS P      T ++ +A+Q     S+ CG   +W  +         SPS  +  T+ +P
Sbjct: 313 YRSLPQQILSDTFTM-VAYQSAVSLSLTCGPYPNWGYVFPGRRGYIISPSIWNPTTLKTP 371

Query: 619 ARST 630
           + ST
Sbjct: 372 SYST 375


>AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.3 protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 268 NDRRLVWLESY*SHNSIKTLQICHGLFDLRQESR*LFKFSNAEQRKA 128
           N ++L W+++      IK L++ H  F++ ++   L  +SN E  KA
Sbjct: 631 NGKQLFWVQNMAFELLIKKLKMHHLKFEMEEQWNFLKNYSNKETDKA 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,180
Number of Sequences: 27780
Number of extensions: 305005
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)