Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e12f
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   2.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   3.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   6.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   9.1  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 289 YTHYSMKTCSKLTGIETRWRHSD 221
           YT + + TCS + G+ET   H D
Sbjct: 284 YTRHFLSTCSNVLGLETTSTHID 306


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 265 MFSSNSGCKNRMLYLNYH*TSVLK*NWKRKQVHRAFVKPCSVFRKRVTVFFYYKD 429
           MFSS   C   +  L    T V   N K K   + F+  C +      +  YY D
Sbjct: 445 MFSSQDQCYILVFSLMMLHTDVFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYD 499


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 417 LLQRLV*RENKMTTTTVQNQPKSNNSQHNTP 509
           +L+ +V   NK  T+  Q+QP S N + N P
Sbjct: 379 VLKLVVTHPNKKNTSVSQSQPASPNLRFNMP 409


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 169 NRKINCLQNSYFD--ILSVSRYDAILFRYLSVWSMFSSNSGCK 291
           NR IN  +N  FD  +  + R D + ++Y+ +  M  + +GC+
Sbjct: 117 NRNINHARN-LFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCR 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,985
Number of Sequences: 5004
Number of extensions: 52529
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)