Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e12f
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    29   2.3  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    29   4.1  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   4.1  

>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 CNKSVEVRELIEKLIVYKTLILTYCRSVAMTP 235
           C+    V E +E LI  K L L+YCR++   P
Sbjct: 671 CSNVTGVSESLESLINLKYLNLSYCRNIGQLP 702


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 74  FYDLTLLYLVRKWLKVCFNVFKCNKSVEVRELIEKLIV 187
           FYD TLLYL ++W K C   F      E + L+ K++V
Sbjct: 361 FYDETLLYLEQEW-KWCLTAF----PEEYKSLVPKVLV 393


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 128 NVFKCNKSVEVRELIEKLIVYKTLILTYCRSVAMTPSCFDTCQ 256
           N+  C+K   + E + KL + + L L+YC  +   PSC    Q
Sbjct: 704 NMTSCSKVQALPESLCKLTMLRHLNLSYCLRLENLPSCIGDLQ 746


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,983
Number of Sequences: 37544
Number of extensions: 297627
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)