Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e12f
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    29   2.1  
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    29   2.1  
Z83105-5|CAB05481.1|  196|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    28   6.4  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 131 VFKCNKSVEVRELIEKLIVYK 193
           VF CN+++ VR+ +EKLI Y+
Sbjct: 97  VFSCNRAMAVRDHVEKLIRYR 117


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 131 VFKCNKSVEVRELIEKLIVYK 193
           VF CN+++ VR+ +EKLI Y+
Sbjct: 97  VFSCNRAMAVRDHVEKLIRYR 117


>Z83105-5|CAB05481.1|  196|Caenorhabditis elegans Hypothetical
           protein F14H3.5 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 419 ITKTSLKRKQNDHDDRTKPT 478
           +TK SLKR+++D DD T P+
Sbjct: 166 MTKKSLKRRRDDEDDETGPS 185


>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 131 VFKCNKSVEVRELIEKLIVYK 193
           VF CN+   VR  +EKLI+Y+
Sbjct: 93  VFSCNRPDSVRAHVEKLIMYR 113


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 131 VFKCNKSVEVRELIEKLIVYK 193
           VF CN+   VR  +EKLI+Y+
Sbjct: 93  VFSCNRPDSVRAHVEKLIMYR 113


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 297 NALLKLPLNLRFEMKLEKKASAPGFR*ALFRVP*TCYRVFLLQRLV*RENKMTTTTVQNQ 476
           N L  LP N+ ++  ++KK S    + ++   P  C +  +  R   R+N   TT   N 
Sbjct: 379 NRLESLPSNVIYDSLMQKKTSPVQRKLSIQNNPWRCDKDLMWLRKWLRDNGDVTTAASNS 438

Query: 477 P 479
           P
Sbjct: 439 P 439


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 145 ITFKNIKTYLEPFSDE--I*QREIIKLKILHERNCKRGHEIR 26
           + F+N   YL+ F DE  + +     ++ LH  NCK G  I+
Sbjct: 329 VHFRNAHNYLKDFKDEQQVYEDSGRIIEFLHNWNCKTGSSIQ 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,614
Number of Sequences: 27780
Number of extensions: 298484
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)