Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e12f
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 460 RPYKTNRSLTIHSTIHH 510
           R Y+T  SLT H ++ H
Sbjct: 43  RRYRTKNSLTTHKSLQH 59


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 RKPGALAFFSNFISKRRFNGNLSKAFCFYTHY 278
           ++P  ++  SN  +   +N N  K  C+  +Y
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 RKPGALAFFSNFISKRRFNGNLSKAFCFYTHY 278
           ++P  ++  SN  +   +N N  K  C+  +Y
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 RKPGALAFFSNFISKRRFNGNLSKAFCFYTHY 278
           ++P  ++  SN  +   +N N  K  C+  +Y
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 RKPGALAFFSNFISKRRFNGNLSKAFCFYTHY 278
           ++P  ++  SN  +   +N N  K  C+  +Y
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 RKPGALAFFSNFISKRRFNGNLSKAFCFYTHY 278
           ++P  ++  SN  +   +N N  K  C+  +Y
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 343 WKRKQVHRAFVKPCSVFRKRVTV 411
           W +   H  F+K CSV    +T+
Sbjct: 122 WLQMTKHHNFIKVCSVNDVNMTI 144


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  ISSENGSRYVLMFLNVINPWK 158
           I  EN  R +   LNVI+ WK
Sbjct: 19  IVRENSPRNLEKSLNVIHEWK 39


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 453 TTTTVQNQPKSNNSQHNTPPAKLQKTYGK 539
           TTTT      + N+   TPP ++ +   K
Sbjct: 671 TTTTTTTPNTTQNASATTPPPQVDEVDDK 699


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 85  EIIKLKILHERNCKRGHEI 29
           E+++L  LH  NCK   ++
Sbjct: 393 EVMELSDLHHPNCKINRKV 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,398
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)