Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e11f
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical pr... 42 3e-04
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 31 0.96
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 30 1.3
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 30 1.3
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 30 1.3
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 30 1.7
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 29 3.9
Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical
protein T28C6.8 protein.
Length = 119
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 336 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 467
+CPAC ++ F+ IL AI FP GI CC+ K C+ C
Sbjct: 10 SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRKTYYCTQC 53
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 30.7 bits (66), Expect = 0.96
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 136 NPRRILRQSLQGFN--RIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQALYQATEPQTL* 309
+P ++LR+ + + R T R L +Q F HH+RA+ H+ L ++A+ +
Sbjct: 676 DPEQVLREQRERLDKERAETQRRLQQQEKNFDHHVRAL-HLEELNERRAVMNMRLSEAPK 734
Query: 310 YHQL*SQSELAPHV 351
H L ++ +A +
Sbjct: 735 LHDLYEEARIAKEI 748
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 317 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 147
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 146 RRGLLGHSWFLHYTE 102
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 317 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 147
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 146 RRGLLGHSWFLHYTE 102
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 317 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 147
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 146 RRGLLGHSWFLHYTE 102
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 227 TTSGL*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRS 337
T SGL C+SS + C +R H +YN Y S+S
Sbjct: 255 TWSGLGDCQCASSNSSDCHWIRLHTNYNKCIYEISKS 291
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = +3
Query: 330 VGA--CPACRVGIL--EDD------FTCLGILCAILFFPLGILCCLALKNRRCSNCGAMF 479
VGA CP CR GI+ + D CL + C L L ++C C CG +
Sbjct: 170 VGALVCPKCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACGACGKKY 229
Query: 480 G 482
G
Sbjct: 230 G 230
>Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical
protein T27E9.9 protein.
Length = 408
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 302 VCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPW 165
+ S+A+ A L + + ++R G+ + + RC W+CM K W
Sbjct: 328 ILSSMAFIFASLIELAVVGYLSRD--GQHGSIKCRCSWLCMNCKDW 371
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Frame = +3
Query: 339 CPACRVGILEDDFTCLGILCAILF---FPLGILCC----LALKN-----RRCSNCGAMFG 482
CP CR+ I+ + G+L I F F G CC L++ C NC AM G
Sbjct: 77 CPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIHTCPNCRAMIG 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,528
Number of Sequences: 27780
Number of extensions: 298494
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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