Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e09r
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   3.6  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   4.7  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   4.7  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   6.3  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 180 DCALF---LARVADRLRLCALSRSVSRPAPIARSFSLAWLIGS 299
           DC  F   L+++AD LR C L++  S   P + S S +  I S
Sbjct: 336 DCCAFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHS 378


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 559 HIIIVISEPISAVTTTTVSIANGNNTSDI 645
           H+  +   PIS V  +  S  +G NT+DI
Sbjct: 129 HVFSICKSPISQVGDSGFSSGSGRNTTDI 157


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 405 FTQTGSYTFGIGRTGAANYFT*TTWKRSE 319
           F + G  T   G+ G+ NY T +TW R E
Sbjct: 532 FLKMGLETGWHGKFGSLNYVTSSTWARQE 560


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 465 SWVIQMYLLRKVNGYGLLIIF 403
           SW  Q +LL  ++G+ L++IF
Sbjct: 238 SWRWQFWLLMMISGFALIVIF 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,592
Number of Sequences: 5004
Number of extensions: 37951
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)