Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e09r
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    32   0.53 
12_02_0634 + 21416205-21416954                                         31   0.70 
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307...    29   4.9  

>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 148 RAIGAGRLRELERARNRSRSVTRARKSAQSEPVGYA-SEKGRAIGA 14
           R+    R R   R+R+RSRS +R+R   +S P G A  EK  AI +
Sbjct: 349 RSSSRHRSRSRSRSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISS 394


>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = -3

Query: 169 GYPNEKERAIGAGRLRELERARNRSRSVTRARKSAQSEPVGYASEKGRAIGAG 11
           G P E E   G  R R   R R R R+  R        P G   E+GR  G G
Sbjct: 197 GSPRETEGKPGWRRWRRRWRRRRRGRTTLRRGGRGGWRPAGNVGERGRRWGGG 249


>02_05_0841 +
           32129863-32130294,32130395-32130459,32130565-32130774,
           32130943-32131024
          Length = 262

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 13  RLRLRALFRSHSRPAPIARSFSLA*PTGSG 102
           +LR R LF +  RPAP AR+  +A   GSG
Sbjct: 77  QLRSRMLFMAPPRPAPAARAPVVAEAAGSG 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,103
Number of Sequences: 37544
Number of extensions: 288466
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)