Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e09r
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 407 YSHRPDHIRLELAGPEPPIILHRPPGRDLKAV 312
           YS RPD + L  +    P +L +   +DL +V
Sbjct: 661 YSKRPDLLHLFGSWSNRPNLLFKDEAKDLVSV 692


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 407 YSHRPDHIRLELAGPEPPIILHRPPGRDLKAV 312
           YS RPD + L  +    P +L +   +DL +V
Sbjct: 661 YSKRPDLLHLFGSWSNRPNLLFKDEAKDLVSV 692


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 475 KLNFELSSRVLKT*KLLLRFNLELFYCHHIIIVISEPISAVTTTTVSIANGNN 633
           K+N   ++ VL+  +     +  + Y ++  I+ISEP   ++     I +G +
Sbjct: 339 KINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYGYPIGSGGS 391


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 407 YSHRPDHIRLELAGPEPPIILHRPPGRDLKAV 312
           YS RPD + L  +    P +L +   +DL +V
Sbjct: 661 YSKRPDLLHLFGSWSNRPNLLFKDEAKDLVSV 692


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 230  SAQSEPVGYPSEKERAIGAGRLP 162
            S   +P+G+P ++  ++GA  +P
Sbjct: 967  SLDGKPLGFPLDRPLSLGALSVP 989


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = -2

Query: 632 LFPFAILTVVVV 597
           LFP+A+LT++++
Sbjct: 240 LFPYALLTILLI 251


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = -2

Query: 632 LFPFAILTVVVV 597
           LFP+A+LT++++
Sbjct: 293 LFPYALLTILLI 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,150
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)