Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e09f
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 32 0.30
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 29 2.8
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 3.7
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 28 4.9
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 28 6.5
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 27 8.6
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 500 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPT 637
DG+ F F++K++R AF+RKV++++ L + + H T
Sbjct: 67 DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDT 111
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 500 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPT 637
DG+ F F++K++R AF+RKV++++ L + + H T
Sbjct: 67 DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDT 111
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 524 FTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRP 634
F+ +++R AF+RKV+ ++ +T F + + P
Sbjct: 22 FSSQTVRAAFVRKVFMLVTIMFAITAAFCVIPMVSEP 58
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 285 TRKVDRTRKVDRTHRVEVTRKVELTL-----QEERIPRVEHTRRADMRPLSLASNLHMAA 449
+++V T+ +VE +K E TL +EER +VE + A ++ ASN+ AA
Sbjct: 718 SKEVKHTKTAPWAAKVEAPQKSEKTLLEIQKEEERKFKVEQEKNAKLKAKEQASNITSAA 777
Query: 450 LVTVNRA 470
+ +++
Sbjct: 778 AIAGDKS 784
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 305 GTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFP 201
G V++AGTP P GT + R+L G +S P
Sbjct: 651 GNVNVAGTPAPTGTPAVAPAAPRRDLPGAASAATP 685
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 491 VGEDGEVKG-FDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRP 634
V DG + G + IR AF+RKV I+ QL+ T+G A +Y+ P
Sbjct: 52 VDADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAA-IYNIP 99
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 622 QEQSDETHRHHQLTHQDRVHLSD 554
Q ++DE +H QL H++ +HLS+
Sbjct: 32 QSRADEAIKHQQLLHRNLLHLSN 54
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/75 (18%), Positives = 35/75 (46%)
Frame = +3
Query: 288 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 467
+K+D +K + HR + R+ + +E+ + + + + + L ++ R
Sbjct: 19 KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 78
Query: 468 AISHRTTQSAKMAKS 512
+S ++ +AK AK+
Sbjct: 79 KLSEKSEPAAKKAKA 93
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/75 (18%), Positives = 35/75 (46%)
Frame = +3
Query: 288 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 467
+K+D +K + HR + R+ + +E+ + + + + + L ++ R
Sbjct: 66 KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 125
Query: 468 AISHRTTQSAKMAKS 512
+S ++ +AK AK+
Sbjct: 126 KLSEKSEPAAKKAKA 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,803
Number of Sequences: 27780
Number of extensions: 288372
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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