Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e09f
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    29   0.038
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 0.038
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 255 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD-MRPLSLAS 431
           + DR  R  R  ++DR   +DRT ++    +++   + +R+ R++ T R D M  ++   
Sbjct: 485 RMDRMDRMDRMDRMDRMDTMDRTDKMS---RIDRMDKIDRMDRMDRTNRMDRMNRMNRQM 541

Query: 432 NLHMAAL 452
           N +M AL
Sbjct: 542 NEYMMAL 548



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +3

Query: 255 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 407
           + +R  R  R  ++DR  ++DR   ++   +++   + +RI R++     D
Sbjct: 377 RVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMD 427



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 264 RTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 407
           R  R  R  ++DR  ++DR  R++    ++   + +R+ R++   R D
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRID 421



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 273 RAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 407
           R  R  ++DR  ++DR H ++    ++ T +   + R++   R D
Sbjct: 407 RIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMDRVD 451



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 261 DRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVE 389
           DRT +     ++DR  +VDR   ++ T K+    + +R+ RV+
Sbjct: 433 DRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVD 475



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 255 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRR 401
           + +R  R  R  ++DR  ++DR  R++    ++   + +R+ R++   R
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDR 422



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = +3

Query: 273 RAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 407
           R  +   +DR  ++DR  R++   + +     +R+ R++     D
Sbjct: 434 RTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMD 478


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 182 NFNKTASEKLNSKDQPNYESMYQN 253
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 182 NFNKTASEKLNSKDQPNYESMYQN 253
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 616 QSDETHRHHQLTHQDRVHLSDESP 545
           QS     HHQ+ +Q   +L  E+P
Sbjct: 71  QSHHHLHHHQVLYQQSPYLMYENP 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,385
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)