Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e07f
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 3.0
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 28 5.3
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 28 5.3
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 28 5.3
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 27 9.3
AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical... 27 9.3
AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical ... 27 9.3
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 1 SRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATD 180
S T TTA+S +T + T + + + + S T + T ST S ++TD
Sbjct: 188 SSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTD 247
Query: 181 RILSKSTS 204
++STS
Sbjct: 248 STTTESTS 255
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Frame = +3
Query: 186 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 341
I FP+++ I + NY+ +YN+ LK T+ N+ + DG + K+
Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371
Query: 342 TELVSWKFITLWENNR--VYFKAHNT 413
+ W F + N V F++++T
Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 530 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWTR 643
R +R P++ Q Q+ + R+++GR Q WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 530 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWTR 643
R +R P++ Q Q+ + R+++GR Q WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 530 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWTR 643
R +R P++ Q Q+ + R+++GR Q WTR
Sbjct: 255 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 292
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 530 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWTR 643
R +R P++ Q Q+ + R+++GR Q WTR
Sbjct: 352 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 389
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 27.5 bits (58), Expect = 9.3
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +3
Query: 141 TMEYCYKLWVGNGQDIVKKYFPLSFRLI 224
T YC+K ++ + +++K+Y + + L+
Sbjct: 557 TYRYCHKFYLKDNSEVIKEYLGIFYHLV 584
>AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical
protein Y111B2A.21 protein.
Length = 240
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 195 KYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITL 374
+Y P+ FR + V R+ A K+ S +PS A+G G + T+ W +T+
Sbjct: 119 QYLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTE--TQKFLWSELTV 176
Query: 375 WENNRVYFKAH 407
+ + KAH
Sbjct: 177 ED----FVKAH 183
>AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical
protein K08D9.5 protein.
Length = 331
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 228 AGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKA 404
A +K+I Y++ S NE A + +D HT + + +FIT ++N V F
Sbjct: 57 ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112
Query: 405 HNTKYNQ 425
+ Y Q
Sbjct: 113 NYPTYTQ 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,529
Number of Sequences: 27780
Number of extensions: 288146
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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