Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e06r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         31   0.18 
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    29   0.74 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   3.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.9  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 682 IYIFIIYCQCAVDFTYN*DVICHVLLSVFQCFVLMMTLLV 563
           +++FII+  C VD  Y  +   H LL V+  F+ ++ LLV
Sbjct: 36  VFLFIIFANCVVDVKYYFEGFSHSLLFVY-FFLTLIILLV 74


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 739 RFTDNLLG--VNYIDFFKA*VIYIFIIYCQCAVDFTYN*DVICHVLLSVFQCFVLMMTL 569
           RF D   G  V++  FF   V + F +   CA+ FT+  DV C V +S+F   V+ + L
Sbjct: 148 RFIDPAWGFAVSWNYFFNYFVTFPFEL-TTCAITFTFWTDVNCAVWISIFLVVVIGINL 205


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 224 LRNIFTLYLKGMYIFRC 174
           LR IFT Y KG ++ RC
Sbjct: 434 LRTIFTRYFKGEFVLRC 450


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 559 VAPTKSSSIQNIEKLTKVHDRLHLNYR 639
           +A +KSSS  +++K+ K+HD L   YR
Sbjct: 108 LALSKSSSTFDLQKIKKIHDCLLSEYR 134


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 233 INLKQLLLKTNLYSNTFRKTG*IRANPTIFKVVIDEYNAISESK*LSLRRIF 388
           I L + +LKT    N F   G +  +P + K+V+D+   + +   + L R+F
Sbjct: 712 IQLNRQVLKTRRTYNLFSDLGYLLQHPQVKKLVVDDTRYVHQY--IDLLRVF 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,965
Number of Sequences: 5004
Number of extensions: 58048
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)