Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e05r
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      56   3e-10
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.53 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   8.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   8.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 27/52 (51%), Positives = 39/52 (75%)
 Frame = -2

Query: 710 NIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLH 555
           N+RER+R  +LNEAF  LR+ +PT   +K LS+I+TL+LA  YI F+ ++LH
Sbjct: 259 NVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLATRYIDFLFQVLH 309


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 164 NFGRQVRKDIPKAVCDKIQTPNLVLICNDI 75
           NF  +  +DI +AV D  +T  L++ C+ I
Sbjct: 78  NFNEKNTRDIVQAVLDDNETDQLIVECSPI 107


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 73  RISLQIKTKFGV*ILSQTALGMSFRTCLPKL 165
           R+SL I T     +L+ T LG+  RT LPK+
Sbjct: 245 RVSLGITT-----VLTMTFLGLEARTDLPKV 270


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 205 LIVDWLIGLCFAV 167
           +IV WL+ LC AV
Sbjct: 175 IIVIWLLALCLAV 187


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 560 LHGSPQPHHGHSA 522
           +H +P  HH H+A
Sbjct: 426 IHATPHHHHSHAA 438


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 170 CNNFGRQVRKDIPKAV 123
           C N GR+++K +P A+
Sbjct: 53  CTNEGRELKKILPDAL 68


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 170 CNNFGRQVRKDIPKAV 123
           C N GR+++K +P A+
Sbjct: 53  CTNEGRELKKILPDAL 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,192
Number of Sequences: 438
Number of extensions: 3538
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)