Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e05f
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 53 1e-07
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 53 1e-07
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 46 1e-05
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 45 4e-05
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 41 7e-04
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 41 7e-04
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 38 0.005
U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein. 38 0.005
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 36 0.015
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 35 0.047
U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop heli... 31 0.58
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 30 1.0
U40797-4|AAB37551.1| 150|Caenorhabditis elegans Helix loop heli... 30 1.3
AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf gro... 29 1.8
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 4.1
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 27 7.1
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 7.1
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 9.4
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 9.4
U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 9.4
AC006678-3|AAK68393.1| 212|Caenorhabditis elegans Hypothetical ... 27 9.4
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
M ++N AF +LR +PTF YEKRLS+I+TL LAI YI+ + ++L
Sbjct: 54 MCSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVL 97
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
M ++N AF +LR +PTF YEKRLS+I+TL LAI YI+ + ++L
Sbjct: 54 MCSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVL 97
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +2
Query: 374 NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
+ N AF +LR +PT EK+LS+IE LR +I YISF+ LL
Sbjct: 47 SFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLL 88
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/42 (45%), Positives = 31/42 (73%)
Frame = +2
Query: 374 NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
N+N+ +++LR+ +P EKR+S+++TLRLAI YI + LL
Sbjct: 188 NVNDGYERLRKHLPVHFDEKRISKVDTLRLAIRYIKHLDNLL 229
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLHGSPQP 517
M LN A D LR +P ++LS+IETLRLA YI + +L + QP
Sbjct: 32 MHGLNNALDMLREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTNEQP 81
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 377 LNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLHGSPQPHHGHSAIHPPR 550
LN+AF LR+ +P+ +K +S+I TLR+A YISF+ E+ + +GHS R
Sbjct: 36 LNDAFTLLRKLIPSMPSDK-MSKIHTLRIATDYISFLDEMQKNGCK-LYGHSIFDEKR 91
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 377 LNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLHGSPQPHHGHSAIHPPR 550
LN+AF LR+ +P+ +K +S+I TLR+A YISF+ E+ + +GHS R
Sbjct: 36 LNDAFTLLRKLIPSMPSDK-MSKIHTLRIATDYISFLDEMQKNGCK-LYGHSIFDEKR 91
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
M LN A+D+LR +P K+LS+ ETL++A YI + ++L
Sbjct: 85 MNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQIL 128
>U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein.
Length = 71
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
M LN A+D+LR +P K+LS+ ETL++A YI + ++L
Sbjct: 14 MNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQIL 57
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 368 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYI-SFMCELLHGSP 511
M +LN+A + LR +P E ++++IETLR A YI S +L GSP
Sbjct: 75 MNSLNDALEHLRGILPALPDEPKMTKIETLRKAQEYIASLSFQLSGGSP 123
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 377 LNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLHGSPQ 514
+N FD LR ++ + K+ S+ +TLR A+ YI + LL+ PQ
Sbjct: 118 VNHGFDVLRNRLQPKNHTKKWSKADTLREAVKYIQQLQVLLNQDPQ 163
>U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop helix
protein 19 protein.
Length = 111
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 374 NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELL 499
++ AF+ LR +P +++ S+ ETL+ A YIS + +L
Sbjct: 16 SIGNAFNMLRNHLPKQLRDRKPSKAETLKSAAQYISHLLRIL 57
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +2
Query: 137 WSSSGGSEVSPYGPLWDAPPAPVPYPDILAFPPADLVWSAAGCGRSVARATPS 295
+S G E P P DA PAP P P P A + AA G A A P+
Sbjct: 29 YSGGAGVEAPPPPPPADAAPAPAPEPAPAPAPEA-VPAPAADAGGYAAAAAPA 80
>U40797-4|AAB37551.1| 150|Caenorhabditis elegans Helix loop helix
protein 12 protein.
Length = 150
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 377 LNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYI 478
+N FD L +P ++ RLSR++ LR A +YI
Sbjct: 29 MNGMFDVLLNLLPPSHFKTRLSRVQILREATSYI 62
>AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf growth
factor relatedprotein 1 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 500 HGSPQPHHGHSAIHPPRLFDSE 565
HG P+ HHGH H R D+E
Sbjct: 268 HGGPRGHHGHRHHHRSRPIDTE 289
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Frame = +2
Query: 95 HFPLMSYGSDTAHVWSSSGGSEVSP-YGPLWDAPPAPVPYPDIL----AFPPADLVWSAA 259
H S G + GG E +P P DA PAP P P+ + P A V +A
Sbjct: 383 HCQYSSGGGGGGYSGGGGGGGEAAPPSSPPADAAPAPPPAPEPVPAPAPAPEAAPVAPSA 442
Query: 260 GCGRSVARATPS 295
G A A P+
Sbjct: 443 DAGGYAAAAAPA 454
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 149 GGSEVSPYGPLWDAPPAPVPYPDILAFPPA 238
GG P P DA PAP P P+ A P A
Sbjct: 36 GGDAAPPPPPPADAAPAPAPAPEPEAAPAA 65
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 129 LTCGPAREAVRCHHTGPCGTRRRLRCLTPIS 221
+TC P C+ G C +RR R LT +S
Sbjct: 48 MTCTPPSPPACCNTCGTCNGKRRRRHLTMLS 78
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 260 QPPTKRGRPVEKPGYRGKAPEPAARP 183
QPP +R R E GYRG P P P
Sbjct: 839 QPPQQRRR-TESSGYRGGPPPPPPMP 863
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 257 PPTKRGR-PVEKPGYRGKAPEPAARPTGARMVTPHCLPSWTTREP 126
PP+ R P + P P R TGA+ T CL + R P
Sbjct: 1924 PPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCECLSGYADRSP 1968
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 257 PPTKRGR-PVEKPGYRGKAPEPAARPTGARMVTPHCLPSWTTREP 126
PP+ R P + P P R TGA+ T CL + R P
Sbjct: 2508 PPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCECLSGYADRSP 2552
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 257 PPTKRGR-PVEKPGYRGKAPEPAARPTGARMVTPHCLPSWTTREP 126
PP+ R P + P P R TGA+ T CL + R P
Sbjct: 1924 PPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCECLSGYADRSP 1968
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 257 PPTKRGR-PVEKPGYRGKAPEPAARPTGARMVTPHCLPSWTTREP 126
PP+ R P + P P R TGA+ T CL + R P
Sbjct: 2508 PPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCECLSGYADRSP 2552
>U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical
protein D1005.2 protein.
Length = 462
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 431 KRLSRIETLRLAITYISFMCELLHGSPQPHHGHSAIHPP 547
KR ++ L ++ S +C+L H + + HH H PP
Sbjct: 349 KRFRPVKNLGDLLSLRSTLCDLDHSTFKVHHNHELGAPP 387
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 257 PPTKRGR-PVEKPGYRGKAPEPAARPTGARMVTPHCLPSWTTREP 126
PP+ R P + P P R TGA+ T CL + R P
Sbjct: 2508 PPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCECLSGYADRSP 2552
>AC006678-3|AAK68393.1| 212|Caenorhabditis elegans Hypothetical
protein R05G9.3 protein.
Length = 212
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 SRNAAP-PTYGSDAECST*TRPSTNCVGRYRRLHTKNVSLASRP*GWRLRT*ASCV 491
+R + P P Y C++ P N YR +H S+ S P G+ L SC+
Sbjct: 91 ARQSGPWPEYEEQYYCAS--TPVANWCDGYRNMHKATESVISMPGGYELVASFSCL 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,397
Number of Sequences: 27780
Number of extensions: 311506
Number of successful extensions: 1065
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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