Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e05f
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      46   3e-07
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +2

Query: 374 NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLH 502
           +LNEAF  LR+ +PT   +K LS+I+TL+LA  YI F+ ++LH
Sbjct: 268 SLNEAFAALRKIIPTLPSDK-LSKIQTLKLATRYIDFLFQVLH 309


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 497 LHGSPQPHHGHSA 535
           +H +P  HH H+A
Sbjct: 426 IHATPHHHHSHAA 438


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 7   IAVFFSCWS 33
           IAVFF CW+
Sbjct: 266 IAVFFICWT 274


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 121 RHGSRVVQLGRQ*GVTIRAPVGRAAGSGALPRYPGFS 231
           RH     Q+GR    T         GSG+LP  P  S
Sbjct: 212 RHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADS 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,312
Number of Sequences: 438
Number of extensions: 3965
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)