Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e01r
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.91
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 29 0.91
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 6.4
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 6.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 6.4
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 6.4
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 6.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 8.5
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 609 ASMPWYTWNSVKPIPPWKTR*P-WIPF 686
A++ Y W+ V PIPP P WIPF
Sbjct: 195 ATLNCYDWDGVNPIPPELWLLPDWIPF 221
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = -2
Query: 639 RNSRYTRACWPARGSRSQHRLSTNTVDVGK*REEHLRKHRQRTTERAISKSNGTHPDRGY 460
R R +A W + + + L + REE RK+ +R +RA ++ T
Sbjct: 298 RGQRARQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQ 357
Query: 459 KAWPSRKTWSS 427
K +W +
Sbjct: 358 KPEQLHPSWEA 368
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 647 HPALEDPVTLDPLSLRAPPPVQEDPVYW 730
HP L +P+ + + PPPV + P +W
Sbjct: 138 HPPLHNPLPVSCQPVLRPPPVPQVPSHW 165
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 150 PLSWRSARSYRPFSTRISSFSPPTLEP 230
PL+ + ++++P R+ SFS P ++P
Sbjct: 434 PLALPNKKAFQPVKFRVPSFSSPLVKP 460
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 314 RPLRHYFPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLE 448
R L Y V SP L + RL P+GHP A+E F +
Sbjct: 229 RFLHPYVKFVDFSPNEKYLVSWSYEPVRLPPIGHP-ARETMPFTD 272
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 418 RVSEGNQASLVHVGTLENQVIRGDRDHREVMAQRA 314
R EG+ + +++G L GD DH +AQ+A
Sbjct: 1313 REREGDSSFEINIGKLRCYYALGDWDHLSELAQKA 1347
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 14 WRFFNDYYLLNGTSRILF 67
W FFN Y+L+ TS I F
Sbjct: 204 WYFFNTLYMLSSTSAIEF 221
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 557 SENDVRNICESIVRERLNELSASLTAPTQTVVTK 456
S N + + + R L ELS L P+QT+ K
Sbjct: 21 SSNALYRVQRPLQRRPLQELSIELVKPSQTITVK 54
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 5 IFFWRFFNDYYLLNGTSR 58
+FF+RFFND Y+ +R
Sbjct: 692 LFFYRFFNDKYIKGKQAR 709
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.5
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = -1
Query: 445 QEDLVFLGLRVSEGNQASLVHVGTLENQVIRGDRDHREVMAQRAIKEIGVLRE*GYPEPK 266
+ DLV+ L +EGN ASL G N+ GD M Q K+ +P+
Sbjct: 110 ENDLVYSELEKNEGNLASLYLTG---NERYAGDERPPTSMRQAIPKDED-------RKPR 159
Query: 265 VLEELRVQLVYLGSRVGGENEE 200
LEE+ + +L E E+
Sbjct: 160 TLEEMEKEAQWLKGYFSEEQEK 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,128
Number of Sequences: 5004
Number of extensions: 53708
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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