Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13e01r
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 32 0.41
06_01_0145 + 1092764-1093351 31 1.3
08_02_0595 + 19097299-19097462,19097490-19097910 30 1.7
08_02_0376 - 16475216-16475608 30 2.2
02_02_0212 - 7915358-7915431,7915515-7916127 29 2.9
10_02_0147 - 5855100-5855105,5855176-5855808 29 3.8
04_03_0081 - 10829429-10829758 29 3.8
05_04_0053 + 17520202-17520984 29 5.1
12_02_0970 + 24939345-24939416,24940689-24941054 28 6.7
12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451 28 6.7
11_01_0584 - 4640982-4641439,4641541-4642273 28 6.7
10_03_0047 - 7358656-7359113,7359216-7359948 28 6.7
09_04_0293 - 16442989-16443446,16443548-16444280 28 6.7
07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992 28 6.7
03_05_0129 - 21102892-21103349,21103452-21104184 28 6.7
03_04_0121 - 17429529-17430639,17430721-17430866 28 6.7
10_01_0044 - 583349-584044 28 8.8
05_01_0372 - 2913518-2916562,2916674-2917528 28 8.8
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 8.8
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 28 8.8
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
G GP G G+ GD G GV G+G G G G G
Sbjct: 19 GDGGPHGIGGSGGDGGCGGVGGLGRKGGRGGHGGRG 54
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 344 GPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
GP G G G GD G G+G G +G G G
Sbjct: 7 GPGGIGGEGGPGGDGGPHGIGGSGGDGGCGGVG 39
>06_01_0145 + 1092764-1093351
Length = 195
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
G GP G G G GD G G+G G +G G G
Sbjct: 103 GNAGPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVG 138
>08_02_0595 + 19097299-19097462,19097490-19097910
Length = 194
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -3
Query: 359 DTGRPGPSGS-NGAKGDKGD--RGVEGVGLPGTEG 264
D +P G+ +G +GD+GD +GV+GVG G +G
Sbjct: 94 DAAQPSNKGAADGFQGDQGDGSQGVQGVGSQGIQG 128
>08_02_0376 - 16475216-16475608
Length = 130
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -2
Query: 735 CSQYTGSSWTGGGARRE-RGSRVTGSSRAGWA*RNSRYTRACWPARGSRSQHRLSTNTVD 559
C ++ W G G + E R ++ ++ A W R S + WPA R+ +L ++
Sbjct: 39 CMEWDEIRWNGDGIKSELRNAKEEETTVAPWRWRPSS---SRWPAMEMRATEKLRASSSV 95
Query: 558 VGK*REEHLRKHRQRTTERAISKS 487
+ R EH + + R+++ S
Sbjct: 96 ASRPRVEHAQSSAGSVSLRSLTVS 119
>02_02_0212 - 7915358-7915431,7915515-7916127
Length = 228
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = -3
Query: 353 GRPGPSGSN--GAKGDKGD--RGVEGVGLPGTEGPRG 255
G+P G+ A+ ++GD +GV GV + GT+GP+G
Sbjct: 103 GQPSDKGATDGSAQENQGDHSQGVHGVQVDGTQGPQG 139
>10_02_0147 - 5855100-5855105,5855176-5855808
Length = 212
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Frame = -3
Query: 332 SNGAKGDK--GDRGVEGVGLPGTEG 264
++G++GD+ G +GV+GVG GT+G
Sbjct: 113 ADGSRGDQDDGSQGVQGVGSQGTQG 137
>04_03_0081 - 10829429-10829758
Length = 109
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 335 GSNGAKGDKGDRGVEGVGLPGTEG 264
GS G +GD G +GV+GVG G +G
Sbjct: 62 GSQGVQGD-GSQGVQGVGSHGIQG 84
>05_04_0053 + 17520202-17520984
Length = 260
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 302 YLLYRPLRHYFPMVPVSPYHLVLQGT 379
YL+YRP R F + V+ Y L L GT
Sbjct: 75 YLVYRPSRPAFAVTSVAVYSLSLNGT 100
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 356 TGRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRG 255
+GR G + A G G+ GVEG G G EG G
Sbjct: 103 SGRSGSGSAEKASGG-GEEGVEGSGYGGGEGGGG 135
>12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451
Length = 537
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 380 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 419
>11_01_0584 - 4640982-4641439,4641541-4642273
Length = 396
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278
>10_03_0047 - 7358656-7359113,7359216-7359948
Length = 396
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278
>09_04_0293 - 16442989-16443446,16443548-16444280
Length = 396
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278
>07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992
Length = 537
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 380 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 419
>03_05_0129 - 21102892-21103349,21103452-21104184
Length = 396
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
FP VP+ Y LV G L P H DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278
>03_04_0121 - 17429529-17430639,17430721-17430866
Length = 418
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 LYRPLRHYFPMV-PVSPYHLVLQGTHVDQARLIPLGH 415
++R LR+ M+ P SPYH ++ G ++A I GH
Sbjct: 216 VHRLLRNGMEMLAPASPYHGLIYGAFQERATFISHGH 252
>10_01_0044 - 583349-584044
Length = 231
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = -3
Query: 356 TGRPGPSGS-NG-AKGDKGD--RGVEGVGLPGTEGPRG 255
+ +P G+ NG A+ ++GD +GV GV GT+GPRG
Sbjct: 102 SAQPSNKGATNGSAQENQGDHSQGVHGVQGDGTQGPRG 139
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -1
Query: 274 EPKVLEELRVQLVYLGSRVGGENEEIL---VEKGL*DLADLQDSGG 146
+PKV+EE V+L G GG+ E+ + G ++A+ +D GG
Sbjct: 42 QPKVVEEEEVRLEGKGGGFGGQEVEVAGDGEDGGEVEVAEAKDEGG 87
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
G G G +G G G G GVG G GP G G
Sbjct: 18 GGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGG 53
>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 212 PSYPRTQVDQLDPELL*--DLRFRVALLPQHPYLLYRPLR 325
PS R +D +D LL DLR R++++PQ P L +R
Sbjct: 1198 PSEGRILIDDVDISLLGVHDLRSRLSVIPQEPTLFQGTVR 1237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,839
Number of Sequences: 37544
Number of extensions: 411182
Number of successful extensions: 1566
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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