Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13e01f
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.8  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.3  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   7.1  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    25   7.1  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   7.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -1

Query: 617  FNSTQSTAI*TDRFATATCSLCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRENST 447
            +NS+ ST +     +  T ++   V   +G L T ++P T T+T+L SG +   N+T
Sbjct: 929  WNSSNSTIV-----SNVTATITGNVTITTGDLTT-IDPTTFTSTYLSSGFQTVSNTT 979


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 SSEPVQCGGNLQCSRTTKAVESSAST 437
           ++ P   GG  +   TTKAVES+ ST
Sbjct: 538 ATTPAYVGGATKTPSTTKAVESTPST 563


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 260 PVVSDLSSRYTAIRSTVWKSESFEFGEQK--DLANGAIVVKLSACPLLYEKRIERKTKTY 87
           P ++ ++S + A  S  W+ E +         L  G + +K +  P+L  K+ ++  +  
Sbjct: 177 PAIAPIASGFIAGSSISWRWEFWILLMLSGVSLLAGVVFLKETYAPVLKRKQAKKLLEKQ 236

Query: 86  GNQKNIVV*LMNI 48
            NQK++ V +  I
Sbjct: 237 ENQKSVEVKISEI 249


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 304 YTPFEDPGTPELGSHRWCPIYPVD 233
           + P +DP   E  S RW P+  V+
Sbjct: 95  HAPGDDPNMYESSSERWSPVQSVE 118


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 521 SRVQSYLLRDGTNYTWLSRIDRFI*QSIVL 610
           S V++ LLRD  NYT + ++D FI + ++L
Sbjct: 634 SAVRAILLRDDVNYTEV-QLDSFIPEIVLL 662


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  VFLVTIRLGLPLNSLLIQQRASR*FHDNGSVREILLLS 185
           V+  T RL    NS +  Q++ R +H NG  RE++ ++
Sbjct: 566 VYFTTKRLHSLNNSYMDHQKSYR-YHQNGLAREVIKIA 602


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 105 LNSLLIQQRASR*FHDNGSVREILLLSKFERLRL 206
           +N+ LI   A+R   DN  VRE LL+S F+  +L
Sbjct: 54  VNNKLIMPTANR---DNQGVREELLVSSFKERKL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,879
Number of Sequences: 5004
Number of extensions: 51940
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)