Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d22f
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.057
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 0.93
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 28 0.93
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 3.7
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 3.7
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 5.0
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.0
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 6.5
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 25 6.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.5
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 6.5
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 6.5
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.7
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 25 8.7
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 8.7
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 32.3 bits (70), Expect = 0.057
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 318 TYKNLQDAIIAYLDDPDTKLPE-SEKAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYN 494
T NL D+ ++ D+ L + + KA + + + R+ ++H T+E Y G+N
Sbjct: 732 TKSNLSDSALSTPQHSDSVLFDITSKAARLASTCAKTDLH-RKPRRKHKSFTLENYFGHN 790
Query: 495 AETERPVYKYTIPEKKPTYYGEEE 566
AE E P + P+ Y E +
Sbjct: 791 AEDESPQSDEVESQTPPSGYSEND 814
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 291 AKRPEYAYSTYKNLQDAIIAYLDDPDTKLPESEK 392
AKR Y YKNL + +Y D+ DT P K
Sbjct: 472 AKRFRETYPRYKNLYLKVSSYYDNNDTNNPNLNK 505
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +3
Query: 321 YKNLQDAIIAYLDDPDTKLPESEKAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYNAE 500
YK + D + ++ L + + +L K+PNY + ++R Y K +++
Sbjct: 258 YKVIPDPSVNKDTPTESDLNRLKADLLRAQLKKDPNY---ESLEREYQKACDDFENSLHP 314
Query: 501 TERPVYKYTIPEKKPTY 551
+E + TIP KK +
Sbjct: 315 SENSNSQATIPSKKRNF 331
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +3
Query: 327 NLQDAIIAYLDDP---DTKLPESEKAIAIQKL 413
N A++ YL DP D++LP+S +AIA+ L
Sbjct: 736 NKLSALVEYLLDPSLRDSQLPQSIRAIALYNL 767
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +3
Query: 390 KAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPT 548
KA F+ P + P I YP G N+ + P Y +KPT
Sbjct: 34 KAAPFIPSFQRPGFVPVNNIAGGYPYAQYTGQGQNSNSPHPTKSYQQYYQKPT 86
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 323 QEFTRCHHSLFGR--PRHQAAGERKSYSHPETIQEPKLLSETANPKTLSENR*RIHRL*C 496
+E CHH F R P + + K + H E K L + T +++ H C
Sbjct: 338 EEHCSCHHDKFSRPVPHNGTKPDHKPWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHC 397
Query: 497 RN*K 508
+ K
Sbjct: 398 HHGK 401
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 3.7
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Frame = +1
Query: 295 NDRNTLTAPTRIYKMPS*LIWTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKP- 471
ND+ T+ A I K + T TP R K+ + + TIR+ + R+P
Sbjct: 63 NDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPI 122
Query: 472 -LKNTPAIMQKLKDPFT------NTRYPKRSLLITGKKRISI*ETLKGTAS 603
+KN P + +P +Y L+ +G ++ + T KG S
Sbjct: 123 LIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPS 173
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 116 ASDIVRKDVS-LFDTLNSEHSSSELDSRKSVAVQTQIRRGVGVPTQIRP 259
A D + ++ LF+T+N E +RKSVA+Q G ++P
Sbjct: 182 AGDFLNANIEQLFNTMNIEFPPHYRIARKSVAIQQSGNMANGSADAVKP 230
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 193 KKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDR 303
KK+ R DS W +PN++S +NTM ++ +N +
Sbjct: 690 KKQARPVDS---WGSTPNTSSNRNSNTMGVSKKKNGK 723
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +3
Query: 459 YPKTVEEYT---GYNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGN 596
YP V T YN + E+P Y + Y E N N+ N N
Sbjct: 12 YPTAVSYPTQGQSYNTQEEQPAYPQRFSTSQGMYAAEYGNANMMNTSEN 60
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 414 IVSGWL*LFRSPAAWCLGRPNKL 346
++SGWL +SP W L RPN++
Sbjct: 104 LLSGWLIESKSP--WILSRPNQV 124
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 YAYSTYKNLQDAIIAYLDDPDTKLPESEKAIAIQKLFKN-PNYYPRQQIQRHYPKTVEE 479
Y Y N ++A A+L + ++P+S + A N P+ +P + P + E
Sbjct: 43 YDYFVKHNFEEAAQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISE 101
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 471 VEEYTGYNAETERPVYKYTIPEKKPTYYGEEENINLGNFE 590
+ Y +NA+ +Y+ IP + +ENIN+GN E
Sbjct: 334 IHAYLNFNAK----LYEECIPPSILYFNKNDENINVGNIE 369
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 438 RQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGNGLSL 608
R +I+RH ++ G N+ + P+Y P+ E+E++ N G+S+
Sbjct: 89 RIEIERHLLGEFDDNVGSNSLLDVPLYSLEAEPLSPSVMLEDESMEGINQSPQGISV 145
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 572 DILFFPVISRLLFGYRVFVNG-SFSFCIIAGVFFNGFRIVSLDLLSRIVIWVLE*FLDGY 396
D +FFP++ L YRV G ++ + ++ +G+R ++L+ ++ +L DG+
Sbjct: 65 DYIFFPIVPVLKSWYRVPSTGVEYAIQCVNLLYKHGWREAHNEMLTMQLLLMLLNIADGW 124
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 285 PGAKRPEYAYSTYKNLQDAIIAYLDDPDTKLPESEK-----AIAIQKLFKNPNYY 434
PG P + YK +D + + L+D D + S A + ++PN+Y
Sbjct: 55 PGELTPRISAQEYKTRRDRVASLLEDNDFMIVTSAPVRHMCGAAFYEYHQDPNFY 109
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 FGRPRHQAAGERKSYSHPETI 415
FG RH+ GE+ +Y H TI
Sbjct: 435 FGAGRHRCIGEQFAYMHLSTI 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,553
Number of Sequences: 5004
Number of extensions: 58562
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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