Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d22f
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403...    29   2.9  
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594...    28   5.0  
12_01_0652 - 5512187-5512273,5512844-5513950                           28   6.7  
05_04_0129 - 18283862-18284328,18284382-18284580                       28   6.7  
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    28   6.7  
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...    28   6.7  
01_06_1377 + 36764461-36765339                                         27   8.8  

>03_05_0358 -
           23438416-23439282,23440116-23440163,23440343-23440382,
           23440459-23440610
          Length = 368

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 101 TFCVCASDIVRKDVSLFDTLNSEHSSSELDSRKSVAVQTQIRRGVGVPTQIRPRKQIR*H 280
           +FCVCA D  R D++    + +  +S+E       AV   +RR  G   + R   QIR  
Sbjct: 67  SFCVCAIDSTRDDLAAGLAMVAGMASAE---GAKAAVLVPVRRRRGAQWRRRRCPQIRAS 123

Query: 281 RP 286
           RP
Sbjct: 124 RP 125


>01_01_0769 -
           5944910-5946613,5946768-5946887,5948243-5948300,
           5948544-5948627,5949356-5949456,5949562-5949745,
           5950746-5950774,5951134-5951226
          Length = 790

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 HSLFGRPRHQAAGERKSYSHPETIQEPKLLSETAN-PKTLSENR 472
           HSL+ R + Q+ G++ S  HP  +  P+LL+  ++   T  EN+
Sbjct: 535 HSLYKRDKSQS-GDQLSSQHPGNVFSPRLLTSLSSIDITAKENK 577


>12_01_0652 - 5512187-5512273,5512844-5513950
          Length = 397

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 321 YKNLQDAIIAYLDDPDTKLPESEKAIAIQKLFKNPNYYPRQQIQRHYPK 467
           +K  +D + +   + DT++PE  + + ++    N N +PR+  +   PK
Sbjct: 345 FKLFEDKVGSATINADTRIPELARQLRLKLNSTNKNKFPREYYKYEGPK 393


>05_04_0129 - 18283862-18284328,18284382-18284580
          Length = 221

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +2

Query: 278 HRPGGETTGI-RLQHLQEFTRCHHSLFGRPRHQAAGERKSYSHPETIQEPKL 430
           H  GGE   + + QHL+E  R      G  + Q   ER   SHP     P +
Sbjct: 110 HVSGGERQLLLQHQHLREQQRAGGDQLGAGQEQGGHERPRSSHPPPASSPPM 161


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 277 TPARGRNDRNTLTAPTRIYKMPS*LIWTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKD 456
           TP  G+  R+   AP +I       I +T+T + R++    P     R   T+R S + D
Sbjct: 6   TPFAGKR-RSVAAAPAKIAAPKPKSIASTRTKTTRKSPPAPPPPRPRRAFGTVRSSNAHD 64

Query: 457 TIRK--PLKNTPAI 492
              K  PL+  P +
Sbjct: 65  APEKPPPLQKAPKV 78


>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 252 FALENKYDDTGPGAKRPEYAYSTYKNLQDAIIAYLDDPDTKLPESEKAIAIQ--KLFKNP 425
           F  EN+    GPG   P   YS  K LQ  + AY D    +L  +   + +   K   + 
Sbjct: 327 FFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHN 386

Query: 426 NYYPRQQIQRHYPKTVEEYTGYNA 497
           N+Y       H  + V+ Y   +A
Sbjct: 387 NHYDGAMNFMHRDEEVDYYPSRHA 410


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 489 YNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGNG 599
           Y+A    P Y+YT     P  Y  + +   G+  GNG
Sbjct: 200 YSAPPPPPQYEYTAGPSAPVEYNRQYDPRAGSGSGNG 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,807
Number of Sequences: 37544
Number of extensions: 356072
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)