Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d22f
(610 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 32 1.8
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 32 1.8
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 32 1.8
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 32 1.8
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 32 1.8
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 32 1.8
AY533563-1|AAS45544.1| 2663|Homo sapiens ankyrin repeat-containi... 31 3.2
AY373756-1|AAR25661.1| 2664|Homo sapiens ankyrin repeat-containi... 31 3.2
AY131227-1|AAN07913.1| 611|Homo sapiens medulloblastoma antigen... 31 3.2
L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula oc... 30 7.3
DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein ... 30 7.3
BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein ... 30 7.3
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 537 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 590
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 591 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 630
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 362 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 415
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 416 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 455
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +1
Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 620 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 673
Query: 355 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 477
T++P RR++ P+R R++ + + R P +
Sbjct: 674 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 713
>AY533563-1|AAS45544.1| 2663|Homo sapiens ankyrin repeat-containing
cofactor-1 protein.
Length = 2663
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 14 GHSSTKVCVGDSRSIFEYRG*KE*SNFVGTFCVCASDIVRKDVSLFDTLNSEHSSS 181
G S K C +S S G + + + C+ S +V KD SLF +L++ +SS
Sbjct: 470 GKRSDKFCSSESESESSESGEDDRDSLGSSGCLKGSPLVLKDPSLFSSLSASSTSS 525
>AY373756-1|AAR25661.1| 2664|Homo sapiens ankyrin repeat-containing
protein protein.
Length = 2664
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 14 GHSSTKVCVGDSRSIFEYRG*KE*SNFVGTFCVCASDIVRKDVSLFDTLNSEHSSS 181
G S K C +S S G + + + C+ S +V KD SLF +L++ +SS
Sbjct: 471 GKRSDKFCSSESESESSESGEDDRDSLGSSGCLKGSPLVLKDPSLFSSLSASSTSS 526
>AY131227-1|AAN07913.1| 611|Homo sapiens medulloblastoma antigen
MU-MB-20.240 protein.
Length = 611
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 14 GHSSTKVCVGDSRSIFEYRG*KE*SNFVGTFCVCASDIVRKDVSLFDTLNSEHSSS 181
G S K C +S S G + + + C+ S +V KD SLF +L++ +SS
Sbjct: 89 GKRSDKFCSSESESESSESGEDDRDSLGSSGCLKGSPLVLKDPSLFSSLSASSTSS 144
>L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula
occludens) protein ZO-1 protein.
Length = 1736
Score = 29.9 bits (64), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 435 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 551
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 343 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 377
>DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 435 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 551
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 355 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 389
>BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 435 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 551
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 355 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,695,675
Number of Sequences: 237096
Number of extensions: 1819081
Number of successful extensions: 4773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4727
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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