Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d22f
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81133-4|CAI70414.2|  184|Caenorhabditis elegans Hypothetical pr...    32   0.28 
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    29   3.4  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z81133-4|CAI70414.2|  184|Caenorhabditis elegans Hypothetical
           protein T28B8.6 protein.
          Length = 184

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 450 QRHYPKTVEEYTGYNAETERPVYKYTIPEKKPT 548
           QR YP ++  Y G  AE + P+ K   P  KPT
Sbjct: 145 QREYPVSLTLYLGQKAEEKTPIIKKAPPAAKPT 177


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPAR 288
           + R R +   RR D  TP RRSP   SP ++    P R
Sbjct: 105 RSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPER 142


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
 Frame = +1

Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
           ++R R + ERR   S   W+      +P      TP+R   D++     +R  K  S   
Sbjct: 99  RRRDRDRSERREPSSRRGWKDRSGDQTPRFKVPDTPSRMSWDQDDREGSSR--KRNS--- 153

Query: 355 WTTQTPSCRRAKK--L*PSRNYS---RTQITIRDSKSKDTIRKPLKNTPAIMQKLKDP 513
           W   TP   R +K  +   R+ S   R++   RD + +   RKP  +  ++ ++  +P
Sbjct: 154 WDMPTPRGERDRKRYMDSERSISSAWRSERRNRDDEKRRRHRKPEDSVRSVKEEKAEP 211


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
 Frame = +1

Query: 175 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 354
           ++R R + ERR   S   W+      +P      TP+R   D++     +R  K  S   
Sbjct: 99  RRRDRDRSERREPSSRRGWKDRSGDQTPRFKVPDTPSRMSWDQDDREGSSR--KRNS--- 153

Query: 355 WTTQTPSCRRAKK--L*PSRNYS---RTQITIRDSKSKDTIRKPLKNTPAIMQKLKDP 513
           W   TP   R +K  +   R+ S   R++   RD + +   RKP  +  ++ ++  +P
Sbjct: 154 WDMPTPRGERDRKRYMDSERSISSAWRSERRNRDDEKRRRHRKPEDSVRSVKEEKAEP 211


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 187 RFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTR 327
           R  K    TD+  P   SP++++   T+T T        +T+T  TR
Sbjct: 79  RLTKPYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,364
Number of Sequences: 27780
Number of extensions: 321939
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)