Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d16r
(759 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 292 8e-79
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 292 8e-79
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 292 8e-79
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 284 3e-76
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 284 3e-76
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 284 3e-76
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 284 3e-76
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 279 1e-74
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 279 1e-74
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 177 4e-44
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 175 1e-43
AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens ... 33 1.1
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 31 4.5
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 292 bits (717), Expect = 8e-79
Identities = 139/173 (80%), Positives = 150/173 (86%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+V+FSGNFLVN+LG WAD GLCYYLSPPES+ I DPVH ++
Sbjct: 62 ISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVV 121
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAF
Sbjct: 122 YIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAF 181
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 182 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 292 bits (717), Expect = 8e-79
Identities = 139/173 (80%), Positives = 150/173 (86%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+V+FSGNFLVN+LG WAD GLCYYLSPPES+ I DPVH ++
Sbjct: 62 ISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVV 121
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAF
Sbjct: 122 YIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAF 181
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 182 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 292 bits (717), Expect = 8e-79
Identities = 139/173 (80%), Positives = 150/173 (86%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+V+FSGNFLVN+LG WAD GLCYYLSPPES+ I DPVH ++
Sbjct: 304 ISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVV 363
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAF
Sbjct: 364 YIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAF 423
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 424 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 284 bits (696), Expect = 3e-76
Identities = 133/173 (76%), Positives = 148/173 (85%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++
Sbjct: 43 ISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVV 102
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAF
Sbjct: 103 YIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAF 162
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 163 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 215
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 284 bits (696), Expect = 3e-76
Identities = 133/173 (76%), Positives = 148/173 (85%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++
Sbjct: 184 ISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVV 243
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAF
Sbjct: 244 YIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAF 303
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 304 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 356
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 284 bits (696), Expect = 3e-76
Identities = 133/173 (76%), Positives = 148/173 (85%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++
Sbjct: 304 ISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVV 363
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAF
Sbjct: 364 YIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAF 423
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 424 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 284 bits (696), Expect = 3e-76
Identities = 133/173 (76%), Positives = 148/173 (85%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++
Sbjct: 304 ISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVV 363
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 400
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAF
Sbjct: 364 YIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAF 423
Query: 399 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 424 GGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 279 bits (683), Expect = 1e-74
Identities = 130/170 (76%), Positives = 145/170 (85%)
Frame = -1
Query: 750 MLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVL 571
ML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++Y++
Sbjct: 1 MLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIV 60
Query: 570 FMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGL 391
FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGL
Sbjct: 61 FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGL 120
Query: 390 CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 121 CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 279 bits (683), Expect = 1e-74
Identities = 130/170 (76%), Positives = 145/170 (85%)
Frame = -1
Query: 750 MLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVL 571
ML+ +FSGN LV++LG W+D GLCYYLSPPES + DPVHA++Y++
Sbjct: 1 MLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIV 60
Query: 570 FMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGL 391
FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGL
Sbjct: 61 FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGL 120
Query: 390 CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 241
CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 121 CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 177 bits (431), Expect = 4e-44
Identities = 82/112 (73%), Positives = 92/112 (82%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+V+FSGNFLVN+LG WAD GLCYYLSPPES+ I DPVH ++
Sbjct: 304 ISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVV 363
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNR 424
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNR
Sbjct: 364 YIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 175 bits (426), Expect = 1e-43
Identities = 81/111 (72%), Positives = 91/111 (81%)
Frame = -1
Query: 759 ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALL 580
ISQML+V+FSGNFLVN+LG WAD GLCYYLSPPES+ I DPVH ++
Sbjct: 304 ISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVV 363
Query: 579 YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELN 427
Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELN
Sbjct: 364 YIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELN 414
>AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens
cDNA FLJ39193 fis, clone OCBBF2004866. ).
Length = 123
Score = 33.1 bits (72), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 248 SVLMPPISACSLTKISKYW*MMVT----ASSIPVPEPMAPRKSASTDRAPMHSPPNA 406
S+ +PP+ + K+ W + + S P+P P+ ++S + R +H PP A
Sbjct: 16 SLCLPPLESGEAWKVPAAWVLQMAPAKATSHSPLPSPVTQQQSRGSSREALHVPPKA 72
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 339 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGS 431
RS WP GSRP + P T T P S CSGS
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGS 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,028,977
Number of Sequences: 237096
Number of extensions: 2202377
Number of successful extensions: 6947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6946
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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