Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d15f
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    49   3e-06
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical...    28   4.6  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    28   4.6  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 40/116 (34%), Positives = 48/116 (41%)
 Frame = +3

Query: 264 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLEXXXXXXXXXXXXEKPAAAST 443
           N E    V  L  E+  L K +DDL +LV  LQ+++ TL               PAAA  
Sbjct: 72  NKEGGEDVSKLREEHSALAKKVDDLASLVAELQLQLSTLRQGQTSSVAAPAAA-PAAAKE 130

Query: 444 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAAYNAKKAKKPVLIAKSNIILDVKP 611
                                        RLAAY AKKA K   IAKS++ILDVKP
Sbjct: 131 EAAGDDDFDLFGSEDEEEDEEKKKVVEE-RLAAYAAKKATKAGPIAKSSVILDVKP 185


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +3

Query: 531 RLAAYNAKKAKKPVLIAKSNIILDVKP 611
           RLAAY  KKAKK   IAKS++ILDVKP
Sbjct: 109 RLAAYAEKKAKKAGPIAKSSVILDVKP 135


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 258 VPNTELSTKVISLENENKDLKKAIDDLRNLVISLQ 362
           +PN E ++  I +E + + +KKA+ ++R +V  ++
Sbjct: 454 IPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIE 488


>AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical
           protein C03A7.13 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 121 FELYLNTIKTLVHTIKLNFYVNKVNRANL 35
           F L+L+ + TLV+T  + F++N + +++L
Sbjct: 8   FILFLSLVSTLVNTSNVVFFINAIGKSHL 36


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 243 ATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVET 377
           A + G+  + +  + + ++ +  +L   I+DLR+L+  +  R+E+
Sbjct: 635 ARIFGIKTSSIPEETLKIQTKKSELTDEINDLRDLMEQMDERIES 679


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 291 SLENENKDLKKAIDDLRN 344
           SLE  N+D+KK IDD+++
Sbjct: 271 SLEKSNEDIKKEIDDMKS 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,096,007
Number of Sequences: 27780
Number of extensions: 195076
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)