Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13d13f
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 92 8e-20
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.15
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.62
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 4.4
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 26 4.4
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 7.6
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 91.9 bits (218), Expect = 8e-20
Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Frame = +3
Query: 198 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 374
LP +ST +L GS+ + + T + +TD PDFS Y+ K T D +
Sbjct: 19 LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65
Query: 375 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 554
+ +Y + F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66 ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119
Query: 555 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQR 674
+ KW+GKP+FIRHRT +EI +V + TLRDPQ D R
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDR 159
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 108 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 236
YF+S+T A S + ++PT +EK++ LPL ST++T+ S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.62
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 60 YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 218
+R +S + G +AP ++ +++ PL PS ++LP ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 168 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 347
TP +++ P+P + SLPI L T +PA A + S D + K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372
Query: 348 TQDPTSKANETIDERQSFTY 407
P S A + +E+Q TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 471 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 638
VS ADV +L ++ + L E+P G + + + +F +HR + + E +P+
Sbjct: 71 VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 620 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 486
GRD ++C + K W S + ++ + FS+L LG I +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +3
Query: 42 NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 200
NY ++ RN+ +N+ + G +S ++ P++ T S + PL
Sbjct: 49 NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108
Query: 201 PKTSTVETLHGSLPIQG 251
P TST T S+P G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 66 NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 236
NK N+++ G AP V+ N+L + + EK P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546
Query: 237 LPIQGLKV 260
P+ L +
Sbjct: 547 QPLTSLNM 554
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,825
Number of Sequences: 5004
Number of extensions: 54816
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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