Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d13f
         (677 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-274|AAF51354.3|  230|Drosophila melanogaster CG7361-PB,...   157   1e-38
AE014134-273|AAF51353.1|  260|Drosophila melanogaster CG7361-PA,...   153   2e-37
BT010222-1|AAQ23540.1|  260|Drosophila melanogaster RH01528p pro...   151   9e-37

>AE014134-274|AAF51354.3|  230|Drosophila melanogaster CG7361-PB,
           isoform B protein.
          Length = 230

 Score =  157 bits (381), Expect = 1e-38
 Identities = 80/143 (55%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
 Frame = +3

Query: 249 GLKVKAGTRVPAQV-RFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXX 425
           GLK  +G  V +   R AHTD+  PDFSAYRR+  +D + + N+T +ER++F+YL+    
Sbjct: 20  GLKA-SGVAVNSMANRQAHTDLQVPDFSAYRRESVKD-SRRRNDTAEERKAFSYLMVGAG 77

Query: 426 XXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTA 605
                         F+ SMSA+A+VLA+AKIEIKL++IPEGKSVTFKWRGKPLFIRHRTA
Sbjct: 78  AVGGAYAAKGLVNTFIGSMSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTA 137

Query: 606 DEISTEKAVPVDTLRDPQHDDQR 674
            EI TE+ VP  TLRDP+ DDQR
Sbjct: 138 AEIETERNVPTSTLRDPEADDQR 160


>AE014134-273|AAF51353.1|  260|Drosophila melanogaster CG7361-PA,
           isoform A protein.
          Length = 260

 Score =  153 bits (372), Expect = 2e-37
 Identities = 79/144 (54%), Positives = 100/144 (69%), Gaps = 1/144 (0%)
 Frame = +3

Query: 249 GLKVKAGTRVPAQV-RFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXX 425
           GLK  +G  V +   R AHTD+  PDFSAYRR+  +D + + N+T +ER++F+YL+    
Sbjct: 20  GLKA-SGVAVNSMANRQAHTDLQVPDFSAYRRESVKD-SRRRNDTAEERKAFSYLMVGAG 77

Query: 426 XXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTA 605
                         F+ SMSA+A+VLA+AKIEIKL++IPEGKSVTFKWRGKPLFIRHRTA
Sbjct: 78  AVGGAYAAKGLVNTFIGSMSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTA 137

Query: 606 DEISTEKAVPVDTLRDPQHDDQRT 677
            EI TE+ VP  TLRDP+ DD  T
Sbjct: 138 AEIETERNVPTSTLRDPEADDVGT 161


>BT010222-1|AAQ23540.1|  260|Drosophila melanogaster RH01528p
           protein.
          Length = 260

 Score =  151 bits (366), Expect = 9e-37
 Identities = 78/144 (54%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
 Frame = +3

Query: 249 GLKVKAGTRVPAQV-RFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXX 425
           GLK  +G  V +   R AHTD+  PDFSAYRR+  +D + + N+T +ER++F+YL+    
Sbjct: 20  GLKA-SGVAVNSMANRQAHTDLQVPDFSAYRRESVKD-SRRRNDTAEERKAFSYLMVGAG 77

Query: 426 XXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTA 605
                         F+ SMSA+A+VLA+AKIEIKL++IPEGKSVTFKWRGKPLFIRH TA
Sbjct: 78  AVGGAYAAKGLVNTFIGSMSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHSTA 137

Query: 606 DEISTEKAVPVDTLRDPQHDDQRT 677
            EI TE+ VP  TLRDP+ DD  T
Sbjct: 138 AEIETERNVPTSTLRDPEADDVGT 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,819,368
Number of Sequences: 53049
Number of extensions: 607227
Number of successful extensions: 1772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)