Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d12r
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U91272-1|AAC51488.1|   25|Homo sapiens T-cell receptor delta cha...    33   1.4  
L13740-1|AAA36763.1|  598|Homo sapiens TR3 orphan receptor protein.    31   5.7  
D85245-1|BAA12746.1|  325|Homo sapiens TR3beta protein.                31   5.7  
D49728-1|BAA08565.1|  598|Homo sapiens DNA binding protein protein.    31   5.7  
CR456704-1|CAG32985.1|  598|Homo sapiens NR4A1 protein.                31   5.7  
BT007144-1|AAP35808.1|  598|Homo sapiens nuclear receptor subfam...    31   5.7  
BC016147-1|AAH16147.1|  598|Homo sapiens nuclear receptor subfam...    31   5.7  
AK131566-1|BAD18699.1|  652|Homo sapiens protein ( Homo sapiens ...    31   5.7  
AL160175-7|CAD38006.1|  783|Homo sapiens TPX2, microtubule-assoc...    30   7.5  
AF287265-1|AAK83033.1|  783|Homo sapiens hepatocellular carcinom...    30   7.5  
AK054891-1|BAB70824.1|  230|Homo sapiens protein ( Homo sapiens ...    30   9.9  
AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.     30   9.9  

>U91272-1|AAC51488.1|   25|Homo sapiens T-cell receptor delta chain
           protein.
          Length = 25

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 92  ERDEKSRSCACDWAGEQERDLRSL 163
           ERDE S  CACD AG  +RD R +
Sbjct: 1   ERDEGSYYCACDTAGGYDRDTRQM 24


>L13740-1|AAA36763.1|  598|Homo sapiens TR3 orphan receptor protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>D85245-1|BAA12746.1|  325|Homo sapiens TR3beta protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>D49728-1|BAA08565.1|  598|Homo sapiens DNA binding protein protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>CR456704-1|CAG32985.1|  598|Homo sapiens NR4A1 protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>BT007144-1|AAP35808.1|  598|Homo sapiens nuclear receptor subfamily
           4, group A, member 1 protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>BC016147-1|AAH16147.1|  598|Homo sapiens nuclear receptor subfamily
           4, group A, member 1 protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 86  SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136


>AK131566-1|BAD18699.1|  652|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16818 fis, clone TRACH1000193, highly  similar
           to Orphan nuclear receptor HMR. ).
          Length = 652

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 165 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 13
           +S   S + SPA +  +  DF    C P PL  P     SS+G + +   C
Sbjct: 140 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 190


>AL160175-7|CAD38006.1|  783|Homo sapiens TPX2,
           microtubule-associated, homolog (Xenopus laevis)
           protein.
          Length = 783

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 207 VREPRSRDPR*WHYTSER---KSRSCSPAQSHAQLRDFSSLSCSPAP 76
           V +   R P  +H  S++   K+ SCS  Q+  Q RD  SL C P P
Sbjct: 331 VEDFHKRTPNRYHLRSKKDDIKTGSCSVTQAGVQWRDHGSLQC-PTP 376


>AF287265-1|AAK83033.1|  783|Homo sapiens hepatocellular
           carcinoma-associated antigen 90 protein.
          Length = 783

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 207 VREPRSRDPR*WHYTSER---KSRSCSPAQSHAQLRDFSSLSCSPAP 76
           V +   R P  +H  S++   K+ SCS  Q+  Q RD  SL C P P
Sbjct: 331 VEDFHKRTPNRYHLRSKKDDIKTGSCSVTQAGVQWRDHGSLQC-PTP 376


>AK054891-1|BAB70824.1|  230|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30329 fis, clone BRACE2007201. ).
          Length = 230

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = -3

Query: 285 LICCL-L*DSRRHMRLRSQ*EYWSRSAVREPRSRD---PR*----WHYTSERKSRSCSPA 130
           + CC+   DS  H R  S    W R  V   RSR    P+     W  T +R  RS S  
Sbjct: 84  MFCCVGSQDSYHHARGGSTAWPWER--VLSARSRGGPCPKTFILQWCSTWKRTRRSSS-- 139

Query: 129 QSHAQLRDFSSLSCSPAPLFSPNFLYFSSTG 37
            S    R F++LSC+  PLFS  +  F++TG
Sbjct: 140 -SDLMTRTFAALSCTATPLFS--WRCFTATG 167


>AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 147 RSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHS 22
           + CS + S+A  R  S  S SP P  SP +    ST  E  S
Sbjct: 484 KGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKRS 525


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,104,861
Number of Sequences: 237096
Number of extensions: 1750553
Number of successful extensions: 6625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6619
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)