Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d12r
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          26   0.32 
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    25   0.74 
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    25   0.74 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.74 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.74 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.74 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.9  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 276 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRGRGRSREHRIIPSHYI 335

Query: 93  SCSPAPLFSPNF 58
              PAP++  NF
Sbjct: 336 EQIPAPVYYGNF 347


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 28  KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 87

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 88  EQIPVPVYYGNF 99


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -3

Query: 255 RHMRLRSQ*EYWSRSAVREPRS----RDPR*WHYTSERKSRSCSPAQSHAQLRDFSS--L 94
           +H+R R+    +SRS  RE +S    R+ R +  TS  +SR         + R   S  +
Sbjct: 277 KHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSREHRIIPSHYI 336

Query: 93  SCSPAPLFSPNF 58
              P P++  NF
Sbjct: 337 EQIPVPVYYGNF 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 168 YTSERKSRSCSPAQSHAQLRDFSSLSCSPAP 76
           Y+  R S S + AQ+H +L    S SC P P
Sbjct: 54  YSGTRSSESLT-AQAHHRLYPAFSSSCDPVP 83


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  QSRECGSIPVEEKYKKLGEKSGAGEQERDEKSRS 115
           + RE  S   E +Y+K  E S    Q+R E+  S
Sbjct: 43  REREQKSYKNEREYRKYRETSKERSQDRTERETS 76


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  QSRECGSIPVEEKYKKLGEKSGAGEQERDEKSRS 115
           + RE  S   E +Y+K  E S    Q+R E+  S
Sbjct: 43  REREQKSYKNEREYRKYRETSKERSQDRTERETS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,034
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)