Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d12f
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.3  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   4.3  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   9.9  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 280 FATNLVFASINELIFPKTNPSTAFLTPNFA 191
           F  N +   I  LI PK N  TA + P+FA
Sbjct: 226 FIVNGIEKLIRMLILPKRNHPTAIIRPSFA 255


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 90  RSRRQLADDDALQPLQEVGDEQ 155
           RSR QL D D L+PL    DE+
Sbjct: 168 RSRLQLEDLDLLEPLSSSSDEE 189


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -3

Query: 409 LGPSSCNLGPMTCPTTPASEPRPPLDGASMPYCLLSSMFCRSRFATNLVFA--SINELIF 236
           LG  S +L   T   +  S+PR   +  S+P+ +  S  C S  A     A  +I+E + 
Sbjct: 371 LGLGSLHLQEQTSDPSIVSDPRTARNIVSIPHQIHFSGTCYSVAAGGWQSAALAISESVL 430

Query: 235 PKTN--PSTAF 209
           P+ N  P T F
Sbjct: 431 PEVNVPPITTF 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,949
Number of Sequences: 5004
Number of extensions: 16764
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)