Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d10f
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.6  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 214  LPFKAECMTVSRHDAGTYPRSFINKCLMHFIFIVFLFYFLPC*ITATSHDNLK*FRHKVC 35
            L  +  C   +    G + R+F    ++H +F++ +FY  PC I  T   N       +C
Sbjct: 1253 LGLRGLCYDFAVQKHGIWRRTFTGLYIVHLLFLLTIFY--PCPIAYTYVRNSIFLILSIC 1310

Query: 34   HSIS 23
            ++I+
Sbjct: 1311 YTIN 1314


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 YSNQKVFTKLRNADWMDGKGI*FGGCHF*HIKRYTVLSTQKK 463
           +++Q   T LR+   M G+GI     H+ HI R    S  +K
Sbjct: 112 FNHQHYSTTLRSPPSMRGRGIDVNSSHYPHISRPRTSSDSQK 153


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 290 NNISSAAHFEALDKIPNYFLTP 225
           N++S   HFE+    PNY  TP
Sbjct: 604 NSVSRNTHFESKSPHPNYSRTP 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,052
Number of Sequences: 5004
Number of extensions: 53640
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)