Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13d10f
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 164 LPALFYQQMPDAFYFHCFSVLFLAMLDH 81
           LP + Y +  DAF   C   +F+A++++
Sbjct: 298 LPPVSYLKAVDAFMSVCTVFVFMALMEY 325


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 218 STQVLKNN*VFYLTPQNEQRN 280
           S Q+LKN+   YL+P+   +N
Sbjct: 15  SPQILKNDKRIYLSPRTPIKN 35


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 NNENKMHQAFVDKRARVGTSIMSRNGHAFRFE 208
           NN+ K H  + +K   +  +I+  N  ++  E
Sbjct: 345 NNDGKWHNIYSEKGLNILGNIIEGNADSYNTE 376


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 NNENKMHQAFVDKRARVGTSIMSRNGHAFRFE 208
           NN+ K H  + +K   +  +I+  N  ++  E
Sbjct: 345 NNDGKWHNIYSEKGLNILGNIIEGNADSYNTE 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,166
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)